FleQ - UniProtKB: Q8P9D2 regulon and binding site collection of Xanthomonas campestris pv. campestris str. ATCC 33913


Sites are listed as curated.

GAACCCCGGCGCCGCGTT
GATCCCCACTCCCGTGTC
GGAAACCGGCGCGGTTTT
GAAACCCGCCGCGGTTTC
GAAAACCGGCGCGGCTTT
AAAGCCCGCTGCCCCGTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GAACCCCGGCGCCGCGTT
GATCCCCACTCCCGTGTC
GGAAACCGGCGCGGTTTT
GAAACCCGCCGCGGTTTC
GAAAACCGGCGCGGCTTT
AAAGCCCGCTGCCCCGTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
GAACCCCGGCGCCGCGTT Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) flhF (XCC1908) , fleN (XCC1907) , fliA (XCC1906) , cheY (XCC1905) , cheZ (XCC1904) , cheA (XCC1903)
... ... flhF fleN fliA cheY cheZ cheA
914 16111660
GATCCCCACTCCCGTGTC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) fliQ (XCC1915) , fliR (XCC1914) , XCC1913 , XCC1912 , XCC1911
... ... fliQ fliR XCC1913 XCC1912 XCC1911
914 16111660
GGAAACCGGCGCGGTTTT Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) fliL (XCC1920) , fliM (XCC1919) , fliN (XCC1918) , fliO (XCC1917) , fliP (XCC1916)
... ... fliL fliM fliN fliO fliP
914 16111660
GAAACCCGCCGCGGTTTC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Site directed mutagenesis (ECO:0005667) fliE (XCC1927) , fliF (XCC1926) , fliG (XCC1925) , fliH (XCC1924) , fliI (XCC1923) , fliJ (XCC1922) , fliK (XCC1921)
... ... fliE fliF fliG fliH fliI fliJ fliK
914 16111660
GAAAACCGGCGCGGCTTT Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) flgG (XCC1947) , flgH (XCC1946) , flgI (XCC1945) , flgJ (XCC1944) , flgK (XCC1943) , flgL (XCC1942)
... ... flgG flgH flgI flgJ flgK flgL
914 16111660
AAAGCCCGCTGCCCCGTC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) flgB (XCC1952) , flgC (XCC1951) , flgD (XCC1950) , flgE (XCC1949) , flgF (XCC1948)
... ... flgB flgC flgD flgE flgF
914 16111660

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

GAACCCCGGCGCCGCGTT
GATCCCCACTCCCGTGTC
GGAAACCGGCGCGGTTTT
GAAACCCGCCGCGGTTTC
GAAAACCGGCGCGGCTTT
AAAGCCCGCTGCCCCGTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GAACCCCGGCGCCGCGTT
GATCCCCACTCCCGTGTC
GGAAACCGGCGCGGTTTT
GAAACCCGCCGCGGTTTC
GAAAACCGGCGCGGCTTT
AAAGCCCGCTGCCCCGTC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.