ClgR - UniProtKB: Q8NP59 regulon and binding site collection of Corynebacterium glutamicum ATCC 13032


Sites are listed as curated.

AAAACGCTGATAGCGAAC
TGTTCGCTACAGGCGTAC
TGTTCGCTTACAGCGTTG
TGATCGCTCACGGCGTTG
ATGTCGCCAATGGCGAAC
TGTAAGCCGAGAGCGAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAAACGCTGATAGCGAACA
TGTACGCCTGTAGCGAACA
ACAACGCTGTAAGCGAACA
GCAACGCCGTGAGCGATCA
ATGTCGCCAATGGCGAACA
TGTAAGCCGAGAGCGAACC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
AAAACGCTGATAGCGAAC Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) clpP (NCgl2328) , NCgl2327
... ... clpP NCgl2327
640 15978086
TGTTCGCTACAGGCGTAC Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) NCgl2585 , NCgl2586 , NCgl2587
... ... NCgl2585 NCgl2586 NCgl2587
640 15978086
TGTTCGCTTACAGCGTTG Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl0748 , NCgl0749
... ... NCgl0748 NCgl0749
640 15978086
TGATCGCTCACGGCGTTG Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl1865 , NCgl1864 , NCgl1863 , NCgl1866
... ... NCgl1865 NCgl1864 NCgl1863 NCgl1866
640 15978086
ATGTCGCCAATGGCGAAC Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) NCgl2507
... ... NCgl2507
640 15978086
TGTAAGCCGAGAGCGAAC Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) NCgl0240 , recR (NCgl0241)
... ... NCgl0240 recR
640 15978086

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

AAAACGCTGATAGCGAAC
TGTTCGCTACAGGCGTAC
TGTTCGCTTACAGCGTTG
TGATCGCTCACGGCGTTG
ATGTCGCCAATGGCGAAC
TGTAAGCCGAGAGCGAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAAACGCTGATAGCGAACA
TGTACGCCTGTAGCGAACA
ACAACGCTGTAAGCGAACA
GCAACGCCGTGAGCGATCA
ATGTCGCCAATGGCGAACA
TGTAAGCCGAGAGCGAACC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.