Fur - UniProtKB: Q7CQY3 regulon and binding site collection of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S


Sites are listed as curated.

GTAATGCAAAGCATAAAA
GAAACGGTAAAAATTACC
CAAATCCAAATCACATCC
CAAATCCAAATCACATCC
CAAAAGCGAAGCAGTCTC
AAATTACCAATAATTTCC
CAAATGCAAATAGTTATC
CAAATGCAAATAGTTATC
ATAATAATAATCATTGTG
GAAAAGCGTACCATTCCC
CTAACGGAAATAATTTTC
CAAATAGCAATCATATTC
ACAATGCTTATCATCACC
GAAATTCGAATAAATAAT
AGAATGATAATAATTACC
CTAATGATAATAATTATC
CAAATAAGAATTATTTTC
ATAACGCTAAGAATAAAC
AAAGCGGCAAACATTATC
GTAATCATAACCATTCTC
GTAATCATAACCATTCTC
AAAATGATTATCAATGCC
GAAATAGATATAATTTAT
AAATTGAGAATAGTTATT
ATAATGCCCATCGTTTCC
AAACTGATAAACATTGCC
CTGATGCTCATCATTATT
ATAAACATTATAATTATA
CAAATAACAACAATTTAA
AAAGTAAAAATCATTGGC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CGTAATGCAAAGCATAAAA
GGTAATTTTTACCGTTTCC
GCAAATCCAAATCACATCC
GCAAATCCAAATCACATCC
GCAAAAGCGAAGCAGTCTC
GGAAATTATTGGTAATTTC
GCAAATGCAAATAGTTATC
GCAAATGCAAATAGTTATC
CACAATGATTATTATTATC
CGAAAAGCGTACCATTCCC
TCTAACGGAAATAATTTTC
GAATATGATTGCTATTTGC
GGTGATGATAAGCATTGTT
CGAAATTCGAATAAATAAT
GGTAATTATTATCATTCTC
GCTAATGATAATAATTATC
GCAAATAAGAATTATTTTC
AATAACGCTAAGAATAAAC
GATAATGTTTGCCGCTTTC
TGTAATCATAACCATTCTC
TGTAATCATAACCATTCTC
GGCATTGATAATCATTTTC
TGAAATAGATATAATTTAT
AAAATTGAGAATAGTTATT
GGAAACGATGGGCATTATG
GGCAATGTTTATCAGTTTA
AATAATGATGAGCATCAGC
CATAAACATTATAATTATA
CCAAATAACAACAATTTAA
GCCAATGATTTTTACTTTA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_016856.1 Q7CQY3 dimer GTAATGCAAAGCATAAAA +[462372:462389] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yajC (STM14_0481) , tgt (STM14_0480) , STM14_0479 , queA (STM14_0478) , secD (STM14_0482) , secF (STM14_0483)
    ... ... yajC tgt STM14_0479 queA secD secF
    241 22017966
    NC_016856.1 Q7CQY3 dimer GAAACGGTAAAAATTACC -[469779:469796] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ybaD (STM14_0492) , yajI (STM14_0490) , tsx (STM14_0489) , STM14_0491 , ribD (STM14_0493)
    ... ... ybaD yajI tsx STM14_0491 ribD
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATCCAAATCACATCC +[495314:495331] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) cyoE (STM14_0519) , cyoC (STM14_0521) , cyoD (STM14_0520) , cyoB (STM14_0522) , cyoA (STM14_0523)
    ... ... cyoE cyoC cyoD cyoB cyoA
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATCCAAATCACATCC +[495314:495331] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) cyoE (STM14_0519) , cyoC (STM14_0521) , cyoD (STM14_0520) , cyoB (STM14_0522) , cyoA (STM14_0523)
    ... ... cyoE cyoC cyoD cyoB cyoA
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAAAGCGAAGCAGTCTC -[498116:498133] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) cyoB (STM14_0522) , cyoA (STM14_0523) , cyoC (STM14_0521) , cyoD (STM14_0520) , cyoE (STM14_0519) , ampG (STM14_0524) , yajG (STM14_0525)
    ... ... cyoB cyoA cyoC cyoD cyoE ampG yajG
    241 22017966
    NC_016856.1 Q7CQY3 dimer AAATTACCAATAATTTCC +[499174:499191] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) cyoA (STM14_0523) , cyoB (STM14_0522) , cyoC (STM14_0521) , cyoD (STM14_0520) , cyoE (STM14_0519) , ampG (STM14_0524) , yajG (STM14_0525)
    ... ... cyoA cyoB cyoC cyoD cyoE ampG yajG
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATGCAAATAGTTATC +[644615:644632] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) fepA (STM14_0682) , STM14_0683 , entD (STM14_0681) , ybdK (STM14_0680) , fes (STM14_0684) , ybdZ (STM14_0685) , entF (STM14_0686)
    ... ... fepA STM14_0683 entD ybdK fes ybdZ entF
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATGCAAATAGTTATC +[644615:644632] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) fepA (STM14_0682) , STM14_0683 , entD (STM14_0681) , ybdK (STM14_0680) , fes (STM14_0684) , ybdZ (STM14_0685) , entF (STM14_0686)
    ... ... fepA STM14_0683 entD ybdK fes ybdZ entF
    241 22017966
    NC_016856.1 Q7CQY3 dimer ATAATAATAATCATTGTG -[1435239:1435256] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ydiE (STM14_1634) , ydiU (STM14_1633) , aroH (STM14_1635) , STM14_1636 , ydiA (STM14_1637)
    ... ... ydiE ydiU aroH STM14_1636 ydiA
    241 22017966
    NC_016856.1 Q7CQY3 dimer GAAAAGCGTACCATTCCC +[1539386:1539403] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) nth (STM14_1752) , ydgQ (STM14_1753) , ydgP (STM14_1754) , rnfD (STM14_1755) , STM14_1756 , ydgM (STM14_1757) , STM14_1758
    ... ... nth ydgQ ydgP rnfD STM14_1756 ydgM STM14_1758
    241 22017966
    NC_016856.1 Q7CQY3 dimer CTAACGGAAATAATTTTC -[1683888:1683905] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yncD (STM14_1920) , STM14_1919 , STM14_1918 , yncC (STM14_1921)
    ... ... yncD STM14_1919 STM14_1918 yncC
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATAGCAATCATATTC +[1842725:1842742] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) tonB (STM14_2100) , yciI (STM14_2101) , STM14_2102
    ... ... tonB yciI STM14_2102
    241 22017966
    NC_016856.1 Q7CQY3 dimer ACAATGCTTATCATCACC +[1857593:1857610] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) hns (STM14_2116) , STM14_2115 , tdk_2 (STM14_2114) , STM14_2117 , galU (STM14_2118)
    ... ... hns STM14_2115 tdk_2 STM14_2117 galU
    241 22017966
    NC_016856.1 Q7CQY3 dimer GAAATTCGAATAAATAAT -[2648850:2648867] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yffB (STM14_3045) , acrD (STM14_3044) , STM14_3043 , dapE (STM14_3046) , STM14_3047 , ypfI (STM14_3048) , STM14_3049
    ... ... yffB acrD STM14_3043 dapE STM14_3047 ypfI STM14_3049
    241 22017966
    NC_016856.1 Q7CQY3 dimer AGAATGATAATAATTACC -[2936547:2936564] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) iroB (STM14_3344) , STM14_3343 , STM14_3342
    ... ... iroB STM14_3343 STM14_3342
    241 22017966
    NC_016856.1 Q7CQY3 dimer CTAATGATAATAATTATC +[2946090:2946107] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) iroN (STM14_3348) , iroE (STM14_3347) , iroD (STM14_3346) , STM14_3349
    ... ... iroN iroE iroD STM14_3349
    241 22017966
    NC_016856.1 Q7CQY3 dimer CAAATAAGAATTATTTTC +[3026507:3026524] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) sitA (STM14_3458) , STM14_3457 , ygbA (STM14_3456) , sitB (STM14_3459) , sitC (STM14_3460) , sitD (STM14_3461)
    ... ... sitA STM14_3457 ygbA sitB sitC sitD
    241 22017966
    NC_016856.1 Q7CQY3 dimer ATAACGCTAAGAATAAAC -[3280994:3281011] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yggU (STM14_3746) , yggT (STM14_3745) , yggS (STM14_3744) , yggR (STM14_3743) , yggV (STM14_3747) , yggW (STM14_3748)
    ... ... yggU yggT yggS yggR yggV yggW
    241 22017966
    NC_016856.1 Q7CQY3 dimer AAAGCGGCAAACATTATC -[3601355:3601372] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) secY (STM14_4123) , rplO (STM14_4124) , rpmJ_2 (STM14_4122) , rpmD (STM14_4125) , rpsE (STM14_4126) , rplR (STM14_4127) , rplF (STM14_4128) , rpsH (STM14_4129) , rpsN (STM14_4130) , rplE (STM14_4131) , rplX (STM14_4132) , rplN (STM14_4133)
    ... ... secY rplO rpmJ_2 rpmD rpsE rplR rplF rpsH rpsN rplE rplX rplN
    241 22017966
    NC_016856.1 Q7CQY3 dimer GTAATCATAACCATTCTC -[3612011:3612028] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) bfd (STM14_4147) , STM14_4148 , tuf_1 (STM14_4149)
    ... ... bfd STM14_4148 tuf_1
    241 22017966
    NC_016856.1 Q7CQY3 dimer GTAATCATAACCATTCTC -[3612011:3612028] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) bfd (STM14_4147) , STM14_4148 , tuf_1 (STM14_4149)
    ... ... bfd STM14_4148 tuf_1
    241 22017966
    NC_016856.1 Q7CQY3 dimer AAAATGATTATCAATGCC -[4280023:4280040] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) sodA (STM14_4878) , STM14_4877 , STM14_4876 , STM14_4875
    ... ... sodA STM14_4877 STM14_4876 STM14_4875
    241 22017966
    NC_016856.1 Q7CQY3 dimer GAAATAGATATAATTTAT -[1755834:1755851] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ynaF (STM14_1997) , STM14_1996 , nifJ (STM14_1995) , STM14_1998
    ... ... ynaF STM14_1996 nifJ STM14_1998
    242 22017966
    NC_016856.1 Q7CQY3 dimer AAATTGAGAATAGTTATT +[2332760:2332777] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) STM14_2693 , STM14_2692 , sanA (STM14_2691) , yeiA (STM14_2694)
    ... ... STM14_2693 STM14_2692 sanA yeiA
    242 22017966
    NC_016856.1 Q7CQY3 dimer ATAATGCCCATCGTTTCC +[2618854:2618871] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) eutC (STM14_3015) , eutB (STM14_3016) , eutL (STM14_3014) , eutK (STM14_3013) , eutR (STM14_3012) , eutA (STM14_3017) , eutH (STM14_3018)
    ... ... eutC eutB eutL eutK eutR eutA eutH
    242 22017966
    NC_016856.1 Q7CQY3 dimer AAACTGATAAACATTGCC +[2620122:2620139] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) eutB (STM14_3016) , eutC (STM14_3015) , eutL (STM14_3014) , eutK (STM14_3013) , eutR (STM14_3012) , eutA (STM14_3017) , eutH (STM14_3018)
    ... ... eutB eutC eutL eutK eutR eutA eutH
    242 22017966
    NC_016856.1 Q7CQY3 dimer CTGATGCTCATCATTATT +[3787002:3787019] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) STM14_4330 , STM14_4329 , STM14_4331
    ... ... STM14_4330 STM14_4329 STM14_4331
    242 22017966
    NC_016856.1 Q7CQY3 dimer ATAAACATTATAATTATA +[3893981:3893998] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) STM14_4449 , STM14_4448 , yibL (STM14_4447) , STM14_4450
    ... ... STM14_4449 STM14_4448 yibL STM14_4450
    242 22017966
    NC_016856.1 Q7CQY3 dimer CAAATAACAACAATTTAA -[4583693:4583710] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dcuA (STM14_5201) , aspA (STM14_5202) , STM14_5203
    ... ... dcuA aspA STM14_5203
    242 22017966
    NC_016856.1 Q7CQY3 dimer AAAGTAAAAATCATTGGC -[4585233:4585250] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) aspA (STM14_5202) , STM14_5203 , fxsA (STM14_5204)
    ... ... aspA STM14_5203 fxsA
    242 22017966

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GTAATGCAAAGCATAAAA
    GAAACGGTAAAAATTACC
    CAAATCCAAATCACATCC
    CAAATCCAAATCACATCC
    CAAAAGCGAAGCAGTCTC
    AAATTACCAATAATTTCC
    CAAATGCAAATAGTTATC
    CAAATGCAAATAGTTATC
    ATAATAATAATCATTGTG
    GAAAAGCGTACCATTCCC
    CTAACGGAAATAATTTTC
    CAAATAGCAATCATATTC
    ACAATGCTTATCATCACC
    GAAATTCGAATAAATAAT
    AGAATGATAATAATTACC
    CTAATGATAATAATTATC
    CAAATAAGAATTATTTTC
    ATAACGCTAAGAATAAAC
    AAAGCGGCAAACATTATC
    GTAATCATAACCATTCTC
    GTAATCATAACCATTCTC
    AAAATGATTATCAATGCC
    GAAATAGATATAATTTAT
    AAATTGAGAATAGTTATT
    ATAATGCCCATCGTTTCC
    AAACTGATAAACATTGCC
    CTGATGCTCATCATTATT
    ATAAACATTATAATTATA
    CAAATAACAACAATTTAA
    AAAGTAAAAATCATTGGC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CGTAATGCAAAGCATAAAA
    GGTAATTTTTACCGTTTCC
    GCAAATCCAAATCACATCC
    GCAAATCCAAATCACATCC
    GCAAAAGCGAAGCAGTCTC
    GGAAATTATTGGTAATTTC
    GCAAATGCAAATAGTTATC
    GCAAATGCAAATAGTTATC
    CACAATGATTATTATTATC
    CGAAAAGCGTACCATTCCC
    TCTAACGGAAATAATTTTC
    GAATATGATTGCTATTTGC
    GGTGATGATAAGCATTGTT
    CGAAATTCGAATAAATAAT
    GGTAATTATTATCATTCTC
    GCTAATGATAATAATTATC
    GCAAATAAGAATTATTTTC
    AATAACGCTAAGAATAAAC
    GATAATGTTTGCCGCTTTC
    TGTAATCATAACCATTCTC
    TGTAATCATAACCATTCTC
    GGCATTGATAATCATTTTC
    TGAAATAGATATAATTTAT
    AAAATTGAGAATAGTTATT
    GGAAACGATGGGCATTATG
    GGCAATGTTTATCAGTTTA
    AATAATGATGAGCATCAGC
    CATAAACATTATAATTATA
    CCAAATAACAACAATTTAA
    GCCAATGATTTTTACTTTA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.