CRP - UniProtKB: A0R5H1 regulon and binding site collection of Mycobacterium smegmatis str. MC2 155


Sites are listed as curated.

CGTGAGCTAACCCACC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CGTGAGCTAACCCACC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008596.1 A0R5H1 not specified CGTGAGCTAACCCACC -[3317713:3317728] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) MSMEG_3233 , cydB (MSMEG_3232) , MSMEG_3234 , cydD (MSMEG_3231) , MSMEG_3230 , MSMEG_3229 , MSMEG_3235 , MSMEG_3236 , MSMEG_3237 , MSMEG_3238 , MSMEG_3239 , MSMEG_3240 , MSMEG_3241 , MSMEG_3242
    ... ... MSMEG_3233 cydB MSMEG_3234 cydD MSMEG_3230 MSMEG_3229 MSMEG_3235 MSMEG_3236 MSMEG_3237 MSMEG_3238 MSMEG_3239 MSMEG_3240 MSMEG_3241 MSMEG_3242
    868 24936051

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CGTGAGCTAACCCACC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CGTGAGCTAACCCACC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.