LexA - UniProtKB: A0L9E2 regulon and binding site collection of Magnetococcus marinus MC-1


Sites are listed as curated.

ACCTAATATTTATTAGGT
ACCTTATTAAAATAAGGT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ACCTAATATTTATTAGGT
ACCTTATTTTAATAAGGT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008576.1 A0L9E2 dimer ACCTAATATTTATTAGGT +[2576723:2576740] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) Mmc1_2105 , Mmc1_2103 , Mmc1_2104 , Mmc1_2106
    ... ... Mmc1_2105 Mmc1_2103 Mmc1_2104 Mmc1_2106
    123 12867456
    NC_008576.1 A0L9E2 dimer ACCTTATTAAAATAAGGT -[2558099:2558116] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) Mmc1_2085 , Mmc1_2081 , Mmc1_2082 , Mmc1_2083 , Mmc1_2084
    ... ... Mmc1_2085 Mmc1_2081 Mmc1_2082 Mmc1_2083 Mmc1_2084
    123 12867456

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ACCTAATATTTATTAGGT
    ACCTTATTAAAATAAGGT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ACCTAATATTTATTAGGT
    ACCTTATTTTAATAAGGT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.