WggR (ExpG) - UniProtKB: P96440 regulon and binding site collection of Sinorhizobium meliloti 2011


Sites are listed as curated.

AATATTGCTTCAATTTTTGAAG
CAAATTACTTTAAAATTTGAAG
CTTCAAAACTTGAAGTAATTT
AAATTACTTCAAGTTTTGAAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTTCAAAAATTGAAGCAATATT
CTTCAAATTTTAAAGTAATTTG
CTTCAAAACTTGAAGTAATTTC
CTTCAAAACTTGAAGTAATTTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_020560.1 P96440 dimer AATATTGCTTCAATTTTTGAAG +[985878:985899] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) wgaA (SM2011_b21319) , wgaB (SM2011_b21320) , wgcA (SM2011_b21318)
    ... ... wgaA wgaB wgcA
    1001 18344362
    NC_020560.1 P96440 dimer CAAATTACTTTAAAATTTGAAG -[980466:980487] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) wgeA (SM2011_b21314)
    ... ... wgeA
    1001 18344362
    NC_020560.1 P96440 dimer CTTCAAAACTTGAAGTAATTT -[983852:983872] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) wgdA (SM2011_b21316) , wgdB (SM2011_b21315) , wggR (SM2011_b21317) , wgcA (SM2011_b21318)
    ... ... wgdA wgdB wggR wgcA
    1001 18344362
    NC_020560.1 P96440 dimer AAATTACTTCAAGTTTTGAAG +[983852:983872] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) wggR (SM2011_b21317) , wgdA (SM2011_b21316) , wgdB (SM2011_b21315) , wgcA (SM2011_b21318)
    ... ... wggR wgdA wgdB wgcA
    1001 18344362

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AATATTGCTTCAATTTTTGAAG
    CAAATTACTTTAAAATTTGAAG
    CTTCAAAACTTGAAGTAATTT
    AAATTACTTCAAGTTTTGAAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTTCAAAAATTGAAGCAATATT
    CTTCAAATTTTAAAGTAATTTG
    CTTCAAAACTTGAAGTAATTTC
    CTTCAAAACTTGAAGTAATTTC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.