RpoN - UniProtKB: P26979 regulon and binding site collection of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2


Sites are listed as curated.

TGGCATAGCCTTTGCTTT
TGTCACGTATTTTGCATG
TGGCACATCCTTTGCAAT
TGGCACGCCGTTTGCCAT
TGGCACGCCTTTTGATTA
TGGCACGTCTATTGCTTT
TGGCATGATTTTTTCATT
TGGCATGAGAGTTGCTTT
TGGCACGAATGCTGCAAT
TGGCACGCAAATTGTATT
TGGCATAAGACCTGCATG
TGGCATGCCTTTTGCTTT
TGGCACAATTACTGCATA
TGGCATGAATATTGCGAG
TGGCACACTAGCTGCAAT
TGGCACGATTCGTGTATA
TGGCATGGAAAATGCTTA
TGGCATAAATATTGCTTT
TGGCACGCTGGTTGCAAT
TGGCACGGTTGTTGCTCG
TGGCACAACCTTTGCTCT
TGGCACGTTATGTGCAAT
TGGCACAGATTTCGCTTT
TGGCACGGAAGATGCAAG
TGGCATGATCTCTGCTTA
TGGCATGATTTTTGTAAG
TGGCATAAAACATGCATA
TGGCAGATATTTTGCTTG
TGGCACGCCGCTTGCTCT
TGGAACGCGTCTTGCAGG
CGGCATGGCATTTGCCAG
CGGCACAGTTTATGCAAG
TGGCCAGAAATATGCTTA
TGGCATTAATGCTGCATC
TGGCATCGATATTGCAAA
TGGCAGGAGTTTTTCAAT
CGGCACGATTTTTTCCAT
TGGCATGAAACTTGTCAC
TGGCCTGAATCTTGCTAA
TGGCATGAAAGCTGCTCA
TGGCATTCTTTATGCTCA
TGGCATCATTATTGCCTA
TGGCATGAAGGTTCATCG
TGGCAAGAATATTGCCAT
TGGCACACGTTTTGCGCT
TGGCATCATTTTTTCAAG
TGGCAAACCTGTGGTATA
TGGCAGGAGCGTTTTATT
TGGCGCGCTTTTTGCCTT
CGGTATAAATAATGCACG
TGGCATATAAATTGAGAT
AGGCATTTTTCTTGCATC
TGGCATCACTGTTGCAGT
TGGCACATCAGGCAAAAG
TGGCAGGTCACCTGCAAT
TGGTACGGATCTTGCCAT
CGGCGTAATTTTTGCATC
CGGCACAGCTCTTGCATC
TGGAACGCTTTTCGCATT
TGGCCCATTGAATGCATC
TGGCATGATGGTCGCCAG
AGGCATGTTTTATGCAAA
TGGTACGTAAAATGCACG
TGGCGCGATTATTGCCAG
TGGCCTGCTATTTGCCCT
TGGCGCGGAAATTGCACA
TGGCATAAAACCTGAAAA
AGGCGCGAATAATGCATC
TGGCCTGATTTTTGCAGG
TGGCGTGGCGATTTCAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGGCATAGCCTTTGCTTT
TGTCACGTATTTTGCATG
TGGCACATCCTTTGCAAT
TGGCACGCCGTTTGCCAT
TGGCACGCCTTTTGATTA
TGGCACGTCTATTGCTTT
TGGCATGATTTTTTCATT
TGGCATGAGAGTTGCTTT
TGGCACGAATGCTGCAAT
TGGCACGCAAATTGTATT
TGGCATAAGACCTGCATG
TGGCATGCCTTTTGCTTT
TGGCACAATTACTGCATA
TGGCATGAATATTGCGAG
TGGCACACTAGCTGCAAT
TGGCACGATTCGTGTATA
TGGCATGGAAAATGCTTA
TGGCATAAATATTGCTTT
TGGCACGCTGGTTGCAAT
TGGCACGGTTGTTGCTCG
TGGCACAACCTTTGCTCT
TGGCACGTTATGTGCAAT
TGGCACAGATTTCGCTTT
TGGCACGGAAGATGCAAG
TGGCATGATCTCTGCTTA
TGGCATGATTTTTGTAAG
TGGCATAAAACATGCATA
TGGCAGATATTTTGCTTG
TGGCACGCCGCTTGCTCT
TGGAACGCGTCTTGCAGG
CGGCATGGCATTTGCCAG
CGGCACAGTTTATGCAAG
TGGCCAGAAATATGCTTA
TGGCATTAATGCTGCATC
TGGCATCGATATTGCAAA
TGGCAGGAGTTTTTCAAT
CGGCACGATTTTTTCCAT
TGGCATGAAACTTGTCAC
TGGCCTGAATCTTGCTAA
TGGCATGAAAGCTGCTCA
TGGCATTCTTTATGCTCA
TGGCATCATTATTGCCTA
TGGCATGAAGGTTCATCG
TGGCAAGAATATTGCCAT
TGGCACACGTTTTGCGCT
TGGCATCATTTTTTCAAG
TGGCAAACCTGTGGTATA
TGGCAGGAGCGTTTTATT
TGGCGCGCTTTTTGCCTT
CGGTATAAATAATGCACG
TGGCATATAAATTGAGAT
AGGCATTTTTCTTGCATC
TGGCATCACTGTTGCAGT
TGGCACATCAGGCAAAAG
TGGCAGGTCACCTGCAAT
TGGTACGGATCTTGCCAT
CGGCGTAATTTTTGCATC
CGGCACAGCTCTTGCATC
TGGAACGCTTTTCGCATT
TGGCCCATTGAATGCATC
TGGCATGATGGTCGCCAG
AGGCATGTTTTATGCAAA
TGGTACGTAAAATGCACG
TGGCGCGATTATTGCCAG
TGGCCTGCTATTTGCCCT
TGGCGCGGAAATTGCACA
TGGCATAAAACCTGAAAA
AGGCGCGAATAATGCATC
TGGCCTGATTTTTGCAGG
TGGCGTGGCGATTTCAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003197.1 P26979 not specified TGGCATAGCCTTTGCTTT +[417913:417930] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) prpB (STM0368) , prpR (STM0367) , prpC (STM0369) , prpD (STM0370) , prpE (STM0371)
    ... ... prpB prpR prpC prpD prpE
    822 24007446
    NC_003197.1 P26979 not specified TGTCACGTATTTTGCATG +[503027:503044] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) clpP (STM0448)
    ... ... clpP
    822 24007446
    NC_003197.1 P26979 not specified TGGCACATCCTTTGCAAT +[520444:520461] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glnK (STM0462) , amtB (STM0463)
    ... ... glnK amtB
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGCCGTTTGCCAT -[636865:636882] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM0577 , STM0576 , STM0575 , STM0574 , STM0573 , STM0572
    ... ... STM0577 STM0576 STM0575 STM0574 STM0573 STM0572
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGCCTTTTGATTA +[711944:711961] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM0649.S , leuS (STM0648) , rlpB (STM0647) , holA (STM0646) , nadD (STM0645) , STM0650 , STM0651 , STM0652 , ybeL (STM0653)
    ... ... STM0649.S leuS rlpB holA nadD STM0650 STM0651 STM0652 ybeL
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGTCTATTGCTTT -[730089:730106] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) gltI (STM0665)
    ... ... gltI
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGATTTTTTCATT -[897061:897078] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glnH (STM0830) , glnP (STM0829) , glnQ (STM0828) , ybiO (STM0827)
    ... ... glnH glnP glnQ ybiO
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGAGAGTTGCTTT -[1363866:1363883] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) yeaG (STM1285) , yeaH (STM1284) , mipA (STM1286)
    ... ... yeaG yeaH mipA
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGAATGCTGCAAT +[1382104:1382121] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) argD (STM1303) , xthA (STM1302) , STM1301 , astA (STM1304) , astD (STM1305) , astB (STM1306) , astE (STM1307)
    ... ... argD xthA STM1301 astA astD astB astE
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGCAAATTGTATT -[1782468:1782485] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pspA (STM1690) , pspB (STM1689) , pspC (STM1688) , pspD (STM1687) , pspE (STM1686) , ycjX (STM1685) , ycjF (STM1684) , tyrR (STM1683) , pspF (STM1691) , sapA (STM1692) , sapB (STM1693) , sapC (STM1694) , sapD (STM1695) , sapF (STM1696)
    ... ... pspA pspB pspC pspD pspE ycjX ycjF tyrR pspF sapA sapB sapC sapD sapF
    822 24007446
    NC_003197.1 P26979 not specified TGGCATAAGACCTGCATG -[2466358:2466375] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) argT (STM2355)
    ... ... argT
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGCCTTTTGCTTT -[2472713:2472730] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM2360 , STM2359 , STM2358 , STM2357 , ubiX (STM2356) , STM2361
    ... ... STM2360 STM2359 STM2358 STM2357 ubiX STM2361
    822 24007446
    NC_003197.1 P26979 not specified TGGCACAATTACTGCATA -[2707856:2707873] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yfhK (STM2564) , yfhG (STM2563) , yfhA (STM2562) , glnB (STM2561)
    ... ... yfhK yfhG yfhA glnB
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGAATATTGCGAG -[2955821:2955838] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) proV (STM2809) , proW (STM2810) , proX (STM2811)
    ... ... proV proW proX
    822 24007446
    NC_003197.1 P26979 not specified TGGCACACTAGCTGCAAT +[2985008:2985025] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM2840 , ygaA (STM2839) , ygbD (STM2841)
    ... ... STM2840 ygaA ygbD
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGATTCGTGTATA -[2990703:2990720] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hydN (STM2843) , hypF (STM2842)
    ... ... hydN hypF
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGGAAAATGCTTA -[2999621:2999638] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hycA (STM2853) , hycB (STM2852) , hycC (STM2851) , hycD (STM2850) , hycE (STM2849) , hycF (STM2848) , hycG (STM2847) , hycH (STM2846) , hycI (STM2845) , STM2844 , hypA (STM2854) , hypB (STM2855) , hypC (STM2856) , hypD (STM2857) , hypE (STM2858)
    ... ... 3000000 hycA hycB hycC hycD hycE hycF hycG hycH hycI STM2844 hypA hypB hypC hypD hypE
    822 24007446
    NC_003197.1 P26979 not specified TGGCATAAATATTGCTTT +[2999752:2999769] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hypA (STM2854) , hycA (STM2853) , hycB (STM2852) , hycC (STM2851) , hycD (STM2850) , hycE (STM2849) , hycF (STM2848) , hycG (STM2847) , hycH (STM2846) , hycI (STM2845) , STM2844 , hypB (STM2855) , hypC (STM2856) , hypD (STM2857) , hypE (STM2858)
    ... ... 3000000 hypA hycA hycB hycC hycD hycE hycF hycG hycH hycI STM2844 hypB hypC hypD hypE
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGCTGGTTGCAAT -[3684716:3684733] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM3521 , STM3519.1N , rtcR (STM3522)
    ... ... STM3521 STM3519.1N rtcR
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGGTTGTTGCTCG -[3736818:3736835] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) rpoH (STM3568)
    ... ... rpoH
    822 24007446
    NC_003197.1 P26979 not specified TGGCACAACCTTTGCTCT -[3972466:3972483] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM3772 , STM3771 , STM3770 , STM3769.S , STM3768 , STM3767
    ... ... STM3772 STM3771 STM3770 STM3769.S STM3768 STM3767
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGTTATGTGCAAT +[4141619:4141636] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) proM (STM3934)
    ... ... proM
    822 24007446
    NC_003197.1 P26979 not specified TGGCACAGATTTCGCTTT -[4217092:4217109] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glnA (STM4007) , typA (STM4009)
    ... ... glnA typA
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGGAAGATGCAAG -[4388216:4388233] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) zraP (STM4172) , hydH (STM4173) , hydG (STM4174)
    ... ... zraP hydH hydG
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGATCTCTGCTTA +[4388384:4388401] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hydH (STM4173) , zraP (STM4172) , hydG (STM4174)
    ... ... hydH zraP hydG
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGATTTTTGTAAG +[4465041:4465058] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pspG (STM4244)
    ... ... pspG
    822 24007446
    NC_003197.1 P26979 not specified TGGCATAAAACATGCATA -[4527546:4527563] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fdhF (STM4285)
    ... ... fdhF
    822 24007446
    NC_003197.1 P26979 not specified TGGCAGATATTTTGCTTG +[4610406:4610423] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yjeB (STM4367) , vacB (STM4368) , yjfH (STM4369) , yjfI (STM4370) , yjfJ (STM4371) , STM4372 , yjfK (STM4373) , yjfL (STM4374) , yjfM (STM4375) , yjfC (STM4376) , aidB (STM4377)
    ... ... yjeB vacB yjfH yjfI yjfJ STM4372 yjfK yjfL yjfM yjfC aidB
    822 24007446
    NC_003197.1 P26979 not specified TGGCACGCCGCTTGCTCT +[4794880:4794897] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) STM4535 , STM4536 , STM4537 , STM4538 , STM4539 , STM4540.S
    ... ... STM4535 STM4536 STM4537 STM4538 STM4539 STM4540.S
    822 24007446
    NC_003197.1 P26979 not specified TGGAACGCGTCTTGCAGG +[153597:153614] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ftsQ (STM0131) , ftsA (STM0132) , ftsZ (STM0133) , lpxC (STM0134)
    ... ... ftsQ ftsA ftsZ lpxC
    822 24007446
    NC_003197.1 P26979 not specified CGGCATGGCATTTGCCAG +[182766:182783] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM0155
    ... ... STM0155
    822 24007446
    NC_003197.1 P26979 not specified CGGCACAGTTTATGCAAG -[368040:368057] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) proA (STM0322) , thrW (STM0323)
    ... ... proA thrW
    822 24007446
    NC_003197.1 P26979 not specified TGGCCAGAAATATGCTTA -[376268:376285] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM0332 , STM0333
    ... ... STM0332 STM0333
    822 24007446
    NC_003197.1 P26979 not specified TGGCATTAATGCTGCATC -[588742:588759] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) allC (STM0527) , ylbA (STM0526)
    ... ... allC ylbA
    822 24007446
    NC_003197.1 P26979 not specified TGGCATCGATATTGCAAA -[761673:761690] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM0699
    ... ... STM0699
    822 24007446
    NC_003197.1 P26979 not specified TGGCAGGAGTTTTTCAAT +[951549:951566] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) potH (STM0879) , potI (STM0880) , ybjO (STM0881) , rumB (STM0882)
    ... ... potH potI ybjO rumB
    822 24007446
    NC_003197.1 P26979 not specified CGGCACGATTTTTTCCAT +[955544:955561] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ulaA (STM0884) , STM0885 , STM0886
    ... ... ulaA STM0885 STM0886
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGAAACTTGTCAC +[971760:971777] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM0901 , STM0902 , STM0903
    ... ... STM0901 STM0902 STM0903
    822 24007446
    NC_003197.1 P26979 not specified TGGCCTGAATCTTGCTAA -[1018079:1018096] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ybjX (STM0940) , ybjY (STM0941) , ybjZ (STM0942)
    ... ... ybjX ybjY ybjZ
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGAAAGCTGCTCA -[1041668:1041685] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) lolA (STM0961) , ycaJ (STM0962)
    ... ... lolA ycaJ
    822 24007446
    NC_003197.1 P26979 not specified TGGCATTCTTTATGCTCA -[1443885:1443902] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ydiM (STM1361) , ydiN (STM1360) , aroE (STM1359) , aroD (STM1358)
    ... ... ydiM ydiN aroE aroD
    822 24007446
    NC_003197.1 P26979 not specified TGGCATCATTATTGCCTA -[1475545:1475562] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) orf242 (STM1390) , orf319 (STM1389)
    ... ... orf242 orf319
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGAAGGTTCATCG +[1490272:1490289] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ssaI (STM1408) , ssaJ (STM1409) , STM1410 , ssaK (STM1411) , ssaL (STM1412) , ssaM (STM1413) , ssaV (STM1414) , ssaN (STM1415) , ssaO (STM1416) , ssaP (STM1417) , ssaQ (STM1418) , ssaR (STM1419) , ssaS (STM1420) , ssaT (STM1421) , ssaU (STM1422)
    ... ... ssaI ssaJ STM1410 ssaK ssaL ssaM ssaV ssaN ssaO ssaP ssaQ ssaR ssaS ssaT ssaU
    822 24007446
    NC_003197.1 P26979 not specified TGGCAAGAATATTGCCAT +[1672844:1672861] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM1586 , STM1585 , yncD (STM1587)
    ... ... STM1586 STM1585 yncD
    822 24007446
    NC_003197.1 P26979 not specified TGGCACACGTTTTGCGCT +[1681564:1681581] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) srfB (STM1594) , srfC (STM1595)
    ... ... srfB srfC
    822 24007446
    NC_003197.1 P26979 not specified TGGCATCATTTTTTCAAG -[1759167:1759184] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM1665 , STM1664 , STM1666
    ... ... STM1665 STM1664 STM1666
    822 24007446
    NC_003197.1 P26979 not specified TGGCAAACCTGTGGTATA +[1998987:1999004] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yecN (STM1904) , yecO (STM1905) , yecP (STM1906)
    ... ... 2000000 yecN yecO yecP
    822 24007446
    NC_003197.1 P26979 not specified TGGCAGGAGCGTTTTATT -[2023380:2023397] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) otsA (STM1928)
    ... ... otsA
    822 24007446
    NC_003197.1 P26979 not specified TGGCGCGCTTTTTGCCTT +[2072997:2073014] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yedA (STM1990) , yedI (STM1989) , STM1988.S
    ... ... yedA yedI STM1988.S
    822 24007446
    NC_003197.1 P26979 not specified CGGTATAAATAATGCACG +[2111220:2111237] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) cbiC (STM2033) , cbiD (STM2032) , cbiE (STM2031) , cbiT (STM2030) , cbiF (STM2029) , cbiG (STM2028) , cbiH (STM2027) , cbiJ (STM2026) , cbiK (STM2025) , cbiL (STM2024) , cbiM (STM2023) , cbiN (STM2022) , cbiQ (STM2021) , cbiO (STM2020) , cbiP (STM2019) , cobU (STM2018) , cobS (STM2017) , cobT (STM2016) , erfK (STM2015)
    ... ... cbiC cbiD cbiE cbiT cbiF cbiG cbiH cbiJ cbiK cbiL cbiM cbiN cbiQ cbiO cbiP cobU cobS cobT erfK
    822 24007446
    NC_003197.1 P26979 not specified TGGCATATAAATTGAGAT +[2198774:2198791] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) wcaA (STM2115) , wcaB (STM2114) , wcaC (STM2113) , wcaD (STM2112) , wcaE (STM2111) , wcaF (STM2110) , gmd (STM2109) , wcaG (STM2108) , wcaH (STM2107) , wcaI (STM2106) , manC (STM2105.S) , cpsG (STM2104) , wcaJ (STM2103) , wzxC (STM2102) , wcaK (STM2101) , wcaL (STM2100) , wcaM (STM2099)
    ... ... wcaA wcaB wcaC wcaD wcaE wcaF gmd wcaG wcaH wcaI manC cpsG wcaJ wzxC wcaK wcaL wcaM
    822 24007446
    NC_003197.1 P26979 not specified AGGCATTTTTCTTGCATC +[2277992:2278009] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yohJ (STM2181) , yohK (STM2182)
    ... ... yohJ yohK
    822 24007446
    NC_003197.1 P26979 not specified TGGCATCACTGTTGCAGT -[2544189:2544206] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) cysK (STM2430) , ptsH (STM2431) , ptsI (STM2432) , crr (STM2433)
    ... ... cysK ptsH ptsI crr
    822 24007446
    NC_003197.1 P26979 not specified TGGCACATCAGGCAAAAG +[2585620:2585637] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM2475
    ... ... STM2475
    822 24007446
    NC_003197.1 P26979 not specified TGGCAGGTCACCTGCAAT -[2586856:2586873] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ypfG (STM2476) , STM2475
    ... ... ypfG STM2475
    822 24007446
    NC_003197.1 P26979 not specified TGGTACGGATCTTGCCAT +[2650461:2650478] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) sinH (STM2517) , sinI (STM2516) , ratA (STM2515)
    ... ... sinH sinI ratA
    822 24007446
    NC_003197.1 P26979 not specified CGGCGTAATTTTTGCATC +[2705785:2705802] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yfhG (STM2563) , yfhA (STM2562) , glnB (STM2561)
    ... ... yfhG yfhA glnB
    822 24007446
    NC_003197.1 P26979 not specified CGGCACAGCTCTTGCATC -[3080043:3080060] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) ygcH (STM2939) , STM2938 , ygbF (STM2937)
    ... ... ygcH STM2938 ygbF
    822 24007446
    NC_003197.1 P26979 not specified TGGAACGCTTTTCGCATT -[3105791:3105808] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) rumA (STM2957) , relA (STM2956) , barA (STM2958)
    ... ... rumA relA barA
    822 24007446
    NC_003197.1 P26979 not specified TGGCCCATTGAATGCATC -[3234163:3234180] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM3072 , STM3073 , STM3074 , STM3075
    ... ... STM3072 STM3073 STM3074 STM3075
    822 24007446
    NC_003197.1 P26979 not specified TGGCATGATGGTCGCCAG -[3472024:3472041] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yhbE (STM3302) , obgE (STM3301)
    ... ... yhbE obgE
    822 24007446
    NC_003197.1 P26979 not specified AGGCATGTTTTATGCAAA -[3702297:3702314] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) glgA (STM3535) , glgP (STM3534)
    ... ... glgA glgP
    822 24007446
    NC_003197.1 P26979 not specified TGGTACGTAAAATGCACG -[3916282:3916299] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) rfaP (STM3721) , yibR (STM3720) , rfaB (STM3719) , rfaI (STM3718) , rfaJ (STM3717) , rfaY (STM3716) , rfaZ (STM3715) , rfaK (STM3714)
    ... ... rfaP yibR rfaB rfaI rfaJ rfaY rfaZ rfaK
    822 24007446
    NC_003197.1 P26979 not specified TGGCGCGATTATTGCCAG -[4072941:4072958] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM3863 , glmU (STM3862)
    ... ... STM3863 glmU
    822 24007446
    NC_003197.1 P26979 not specified TGGCCTGCTATTTGCCCT +[4128294:4128311] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) wzzE (STM3919) , wecB (STM3920) , wecC (STM3921) , rffG (STM3922) , rffH (STM3923) , wecD (STM3924) , wecE (STM3925) , wzxE (STM3926) , STM3927 , wecF (STM3928) , wecG (STM3929)
    ... ... wzzE wecB wecC rffG rffH wecD wecE wzxE STM3927 wecF wecG
    822 24007446
    NC_003197.1 P26979 not specified TGGCGCGGAAATTGCACA +[4133231:4133248] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) wecD (STM3924) , wecE (STM3925) , wzxE (STM3926) , STM3927 , wecF (STM3928) , wecG (STM3929)
    ... ... wecD wecE wzxE STM3927 wecF wecG
    822 24007446
    NC_003197.1 P26979 not specified TGGCATAAAACCTGAAAA +[4222707:4222724] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) STM4013.S , STM4012 , STM4011 , STM4010
    ... ... STM4013.S STM4012 STM4011 STM4010
    822 24007446
    NC_003197.1 P26979 not specified AGGCGCGAATAATGCATC -[4446300:4446317] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) yjbA (STM4226)
    ... ... yjbA
    822 24007446
    NC_003197.1 P26979 not specified TGGCCTGATTTTTGCAGG +[4532021:4532038] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) proP (STM4290) , phnA (STM4289) , phnB (STM4288)
    ... ... proP phnA phnB
    822 24007446
    NC_003197.1 P26979 not specified TGGCGTGGCGATTTCAAT +[4826907:4826924] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details PSSM site search (ECO:0005659) stjB (STM4572) , STM4571
    ... ... stjB STM4571
    822 24007446

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGGCATAGCCTTTGCTTT
    TGTCACGTATTTTGCATG
    TGGCACATCCTTTGCAAT
    TGGCACGCCGTTTGCCAT
    TGGCACGCCTTTTGATTA
    TGGCACGTCTATTGCTTT
    TGGCATGATTTTTTCATT
    TGGCATGAGAGTTGCTTT
    TGGCACGAATGCTGCAAT
    TGGCACGCAAATTGTATT
    TGGCATAAGACCTGCATG
    TGGCATGCCTTTTGCTTT
    TGGCACAATTACTGCATA
    TGGCATGAATATTGCGAG
    TGGCACACTAGCTGCAAT
    TGGCACGATTCGTGTATA
    TGGCATGGAAAATGCTTA
    TGGCATAAATATTGCTTT
    TGGCACGCTGGTTGCAAT
    TGGCACGGTTGTTGCTCG
    TGGCACAACCTTTGCTCT
    TGGCACGTTATGTGCAAT
    TGGCACAGATTTCGCTTT
    TGGCACGGAAGATGCAAG
    TGGCATGATCTCTGCTTA
    TGGCATGATTTTTGTAAG
    TGGCATAAAACATGCATA
    TGGCAGATATTTTGCTTG
    TGGCACGCCGCTTGCTCT
    TGGAACGCGTCTTGCAGG
    CGGCATGGCATTTGCCAG
    CGGCACAGTTTATGCAAG
    TGGCCAGAAATATGCTTA
    TGGCATTAATGCTGCATC
    TGGCATCGATATTGCAAA
    TGGCAGGAGTTTTTCAAT
    CGGCACGATTTTTTCCAT
    TGGCATGAAACTTGTCAC
    TGGCCTGAATCTTGCTAA
    TGGCATGAAAGCTGCTCA
    TGGCATTCTTTATGCTCA
    TGGCATCATTATTGCCTA
    TGGCATGAAGGTTCATCG
    TGGCAAGAATATTGCCAT
    TGGCACACGTTTTGCGCT
    TGGCATCATTTTTTCAAG
    TGGCAAACCTGTGGTATA
    TGGCAGGAGCGTTTTATT
    TGGCGCGCTTTTTGCCTT
    CGGTATAAATAATGCACG
    TGGCATATAAATTGAGAT
    AGGCATTTTTCTTGCATC
    TGGCATCACTGTTGCAGT
    TGGCACATCAGGCAAAAG
    TGGCAGGTCACCTGCAAT
    TGGTACGGATCTTGCCAT
    CGGCGTAATTTTTGCATC
    CGGCACAGCTCTTGCATC
    TGGAACGCTTTTCGCATT
    TGGCCCATTGAATGCATC
    TGGCATGATGGTCGCCAG
    AGGCATGTTTTATGCAAA
    TGGTACGTAAAATGCACG
    TGGCGCGATTATTGCCAG
    TGGCCTGCTATTTGCCCT
    TGGCGCGGAAATTGCACA
    TGGCATAAAACCTGAAAA
    AGGCGCGAATAATGCATC
    TGGCCTGATTTTTGCAGG
    TGGCGTGGCGATTTCAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGGCATAGCCTTTGCTTT
    TGTCACGTATTTTGCATG
    TGGCACATCCTTTGCAAT
    TGGCACGCCGTTTGCCAT
    TGGCACGCCTTTTGATTA
    TGGCACGTCTATTGCTTT
    TGGCATGATTTTTTCATT
    TGGCATGAGAGTTGCTTT
    TGGCACGAATGCTGCAAT
    TGGCACGCAAATTGTATT
    TGGCATAAGACCTGCATG
    TGGCATGCCTTTTGCTTT
    TGGCACAATTACTGCATA
    TGGCATGAATATTGCGAG
    TGGCACACTAGCTGCAAT
    TGGCACGATTCGTGTATA
    TGGCATGGAAAATGCTTA
    TGGCATAAATATTGCTTT
    TGGCACGCTGGTTGCAAT
    TGGCACGGTTGTTGCTCG
    TGGCACAACCTTTGCTCT
    TGGCACGTTATGTGCAAT
    TGGCACAGATTTCGCTTT
    TGGCACGGAAGATGCAAG
    TGGCATGATCTCTGCTTA
    TGGCATGATTTTTGTAAG
    TGGCATAAAACATGCATA
    TGGCAGATATTTTGCTTG
    TGGCACGCCGCTTGCTCT
    TGGAACGCGTCTTGCAGG
    CGGCATGGCATTTGCCAG
    CGGCACAGTTTATGCAAG
    TGGCCAGAAATATGCTTA
    TGGCATTAATGCTGCATC
    TGGCATCGATATTGCAAA
    TGGCAGGAGTTTTTCAAT
    CGGCACGATTTTTTCCAT
    TGGCATGAAACTTGTCAC
    TGGCCTGAATCTTGCTAA
    TGGCATGAAAGCTGCTCA
    TGGCATTCTTTATGCTCA
    TGGCATCATTATTGCCTA
    TGGCATGAAGGTTCATCG
    TGGCAAGAATATTGCCAT
    TGGCACACGTTTTGCGCT
    TGGCATCATTTTTTCAAG
    TGGCAAACCTGTGGTATA
    TGGCAGGAGCGTTTTATT
    TGGCGCGCTTTTTGCCTT
    CGGTATAAATAATGCACG
    TGGCATATAAATTGAGAT
    AGGCATTTTTCTTGCATC
    TGGCATCACTGTTGCAGT
    TGGCACATCAGGCAAAAG
    TGGCAGGTCACCTGCAAT
    TGGTACGGATCTTGCCAT
    CGGCGTAATTTTTGCATC
    CGGCACAGCTCTTGCATC
    TGGAACGCTTTTCGCATT
    TGGCCCATTGAATGCATC
    TGGCATGATGGTCGCCAG
    AGGCATGTTTTATGCAAA
    TGGTACGTAAAATGCACG
    TGGCGCGATTATTGCCAG
    TGGCCTGCTATTTGCCCT
    TGGCGCGGAAATTGCACA
    TGGCATAAAACCTGAAAA
    AGGCGCGAATAATGCATC
    TGGCCTGATTTTTGCAGG
    TGGCGTGGCGATTTCAAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.