CRP - UniProtKB: P0ACJ8 regulon and binding site collection of Escherichia coli str. K-12 substr. MG1655


Sites are listed as curated.

TTTTATGAAGCCCTTCACAGAA
TGTAATGGATGTCACG
CGTGAGCAATATCACG
CGTGAGCAATATCACG
AGTGATCCAGGTCACG
TGTGACAAATATCACA
CGAGATAACGATCACA
TGTTTTCGATTTCAAA
TGTGCGGCAATCCACA
TGTTATACATATCACT
GGTAATTGATTTCACT
CGCGATAGATTTCACG
TGTGCGGCAATTCACA
TGTAACAGAGATCACA
TGTAACAGAGATCACA
TGTGATCTCTGTTACA
TGTGAGTGATTTCACA
TGTGAAATCACTCACA
GGTGATCTATTTCACA
CGTAATCTGGATCACT
TGCTACGCATGTCACA
TGTGATTCGATTCACA
TGTGAATCGAATCACA
TGTGATTCGATTCACA
TGTGAATCGAATCACA
GGTGAAGGAGGTCACG
TTTGATCTCGCTCACA
TTTGACGGCTATCACG
CGTGATAGCCGTCAAA
TTTTATAGGTGTCACA
GGTGAAGGAGGTCACG
TGTGAGCGAGATCAAA
TTTGATCTCGCTCACA
CGTGATAGCCGTCAAA
TTTGACGGCTATCACG
TTTTATAGGTGTCACA
TGTAATGGATGTCACG
CGTGAGCAATATCACG
AGTGATCCAGGTCACG
TGTGACAAATATCACA
TGTGATATTTGTCACA
CGAGATAACGATCACA
TGTTTTCGATTTCAAA
TGTGCGGCAATTCACA
TGTTATACATATCACT
GGTAATTGATTTCACT
CGCGATAGATTTCACG
TGTGCGGCAATTCACA
TGTAACAGAGATCACA
TGTGATCTCTGTTACA
TGTAACAGAGATCACA
TGTGATCTCTGTTACA
TGTGAGTGATTTCACA
TGTGAAATCACTCACA
GGTGATCTATTTCACA
CGTAATCTGGATCACT
TGCTACGCATGTCACA
TGTGATTCGATTCACA
TGTGAATCGAATCACA
TGTATTCTGCTTCACG
TGTGATTCGATTCACA
TGTGAATCGAATCACA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTCTGTGAAGGGCTTCATAAAA
TAATGTAATGGATGTCACGGCT
TGGCGTGAGCAATATCACGACC
TGGCGTGAGCAATATCACGACC
AACAGTGATCCAGGTCACGATA
AAATGTGACAAATATCACAGGT
TTTTGTGATCGTTATCTCGATA
GTTTGTTTTCGATTTCAAAATA
TGCTGTGCGGCAATCCACAGAT
TAATGTTATACATATCACTCTA
GCAGGTAATTGATTTCACTCTC
CTACGCGATAGATTTCACGCTG
ATGTGTGCGGCAATTCACATTT
TTCTGTAACAGAGATCACACAA
TTCTGTAACAGAGATCACACAA
TTCTGTAACAGAGATCACACAA
ATCTGTGAGTGATTTCACAGTA
ATCTGTGAGTGATTTCACAGTA
AGCGGTGATCTATTTCACAAAT
TAAAGTGATCCAGATTACGGTA
GCTTGCTACGCATGTCACATTT
GATTGTGATTCGATTCACATTT
GATTGTGATTCGATTCACATTT
GATTGTGATTCGATTCACATTT
GATTGTGATTCGATTCACATTT
CTCGGTGAAGGAGGTCACGCTA
ACATGTGAGCGAGATCAAATTC
TTGTTTGACGGCTATCACGTTT
TTGTTTGACGGCTATCACGTTT
CTTTTTTATAGGTGTCACAAAG
CTCGGTGAAGGAGGTCACGCTA
ACATGTGAGCGAGATCAAATTC
ACATGTGAGCGAGATCAAATTC
TTGTTTGACGGCTATCACGTTT
TTGTTTGACGGCTATCACGTTT
CTTTTTTATAGGTGTCACAAAG
TAATGTAATGGATGTCACGGCT
TGGCGTGAGCAATATCACGACC
AACAGTGATCCAGGTCACGATA
AAATGTGACAAATATCACAGGT
AAATGTGACAAATATCACAGGT
TTTTGTGATCGTTATCTCGATA
GTTTGTTTTCGATTTCAAAATA
ATGTGTGCGGCAATTCACATTT
TAATGTTATACATATCACTCTA
GCAGGTAATTGATTTCACTCTC
CTACGCGATAGATTTCACGCTG
ATGTGTGCGGCAATTCACATTT
TTCTGTAACAGAGATCACACAA
TTCTGTAACAGAGATCACACAA
TTCTGTAACAGAGATCACACAA
TTCTGTAACAGAGATCACACAA
ATCTGTGAGTGATTTCACAGTA
ATCTGTGAGTGATTTCACAGTA
AGCGGTGATCTATTTCACAAAT
TAAAGTGATCCAGATTACGGTA
GCTTGCTACGCATGTCACATTT
GATTGTGATTCGATTCACATTT
GATTGTGATTCGATTCACATTT
CTTTGTATTCTGCTTCACGCTG
GATTGTGATTCGATTCACATTT
GATTGTGATTCGATTCACATTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_000913.2 P0ACJ8 dimer TTTTATGAAGCCCTTCACAGAA +[1486143:1486164] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) ydcF (b1414) , aldA (b1415) , gapC (b4493)
    ... ... ydcF aldA gapC
    7 9202484
    NC_000913.2 P0ACJ8 dimer TGTAATGGATGTCACG -[4217128:4217143] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) aceA (b4015) , aceB (b4014) , aceK (b4016) , arpA (b4017)
    ... ... aceA aceB aceK arpA
    38 15150239
    NC_000913.2 P0ACJ8 dimer CGTGAGCAATATCACG +[1685209:1685224] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fumA (b1612) , fumC (b1611) , tus (b1610)
    ... ... fumA fumC tus
    38 15150239
    NC_000913.2 P0ACJ8 dimer CGTGAGCAATATCACG +[1685209:1685224] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fumA (b1612) , fumC (b1611) , tus (b1610)
    ... ... fumA fumC tus
    38 15150239
    NC_000913.2 P0ACJ8 dimer AGTGATCCAGGTCACG -[754089:754104] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gltA (b0720) , sdhC (b0721) , sdhD (b0722) , sdhA (b0723) , sdhB (b0724)
    ... ... gltA sdhC sdhD sdhA sdhB
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGACAAATATCACA +[4084070:4084085] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fdhD (b3895) , yiiG (b3896) , frvR (b3897) , frvX (b3898) , frvB (b3899) , frvA (b3900)
    ... ... fdhD yiiG frvR frvX frvB frvA
    38 15150239
    NC_000913.2 P0ACJ8 dimer CGAGATAACGATCACA +[2175288:2175303] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gatZ (b2095) , gatY (b2096) , gatA (b2094) , gatB (b2093) , gatC (b2092) , gatD (b2091) , fbaB (b2097)
    ... ... gatZ gatY gatA gatB gatC gatD fbaB
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTTTTCGATTTCAAA +[2175243:2175258] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gatZ (b2095) , gatY (b2096) , gatA (b2094) , gatB (b2093) , gatC (b2092) , gatD (b2091) , fbaB (b2097)
    ... ... gatZ gatY gatA gatB gatC gatD fbaB
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGCGGCAATCCACA -[4111848:4111863] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fpr (b3924) , uspD (b3923) , yiiS (b3922) , glpX (b3925)
    ... ... fpr uspD yiiS glpX
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTTATACATATCACT +[3559922:3559937] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glpD (b3426) , glpE (b3425) , glpG (b3424) , glpR (b3423) , rtcR (b3422)
    ... ... glpD glpE glpG glpR rtcR
    38 15150239
    NC_000913.2 P0ACJ8 dimer GGTAATTGATTTCACT -[3560893:3560908] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glpD (b3426) , yzgL (b3427)
    ... ... glpD yzgL
    38 15150239
    NC_000913.2 P0ACJ8 dimer CGCGATAGATTTCACG -[2348709:2348724] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glpQ (b2239) , yfaH (b2238) , glpT (b2240)
    ... ... glpQ yfaH glpT
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGCGGCAATTCACA -[2350506:2350521] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glpT (b2240) , glpQ (b2239) , yfaH (b2238) , glpA (b2241) , glpB (b2242) , glpC (b2243)
    ... ... glpT glpQ yfaH glpA glpB glpC
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTAACAGAGATCACA -[4244555:4244570] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) malE (b4034) , malK (b4035)
    ... ... malE malK
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTAACAGAGATCACA -[4244555:4244570] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) malE (b4034) , malK (b4035)
    ... ... malE malK
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGATCTCTGTTACA +[4244555:4244570] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) malK (b4035) , malE (b4034)
    ... ... malK malE
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGAGTGATTTCACA -[2238621:2238636] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) mglB (b2150) , galS (b2151)
    ... ... mglB galS
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGAAATCACTCACA +[2238621:2238636] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) mglB (b2150) , galS (b2151)
    ... ... mglB galS
    38 15150239
    NC_000913.2 P0ACJ8 dimer GGTGATCTATTTCACA -[4366537:4366552] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) aspA (b4139) , fxsA (b4140) , yjeH (b4141)
    ... ... aspA fxsA yjeH
    38 15150239
    NC_000913.2 P0ACJ8 dimer CGTAATCTGGATCACT +[4366487:4366502] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) aspA (b4139) , fxsA (b4140) , yjeH (b4141)
    ... ... aspA fxsA yjeH
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGCTACGCATGTCACA -[1078191:1078206] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) putP (b1015) , putA (b1014) , rutR (b1013)
    ... ... putP putA rutR
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGATTCGATTCACA +[3886366:3886381] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tnaC (b3707) , mnmE (b3706)
    ... ... tnaC mnmE
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGAATCGAATCACA -[3886366:3886381] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tnaC (b3707) , mnmE (b3706)
    ... ... tnaC mnmE
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGATTCGATTCACA +[3886366:3886381] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tnaC (b3707) , mnmE (b3706)
    ... ... tnaC mnmE
    38 15150239
    NC_000913.2 P0ACJ8 dimer TGTGAATCGAATCACA -[3886366:3886381] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tnaC (b3707) , mnmE (b3706)
    ... ... tnaC mnmE
    38 15150239
    NC_000913.2 P0ACJ8 dimer GGTGAAGGAGGTCACG -[125289:125304] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) aceE (b0114) , pdhR (b0113) , aceF (b0115)
    ... ... aceE pdhR aceF
    39 15150239
    NC_000913.2 P0ACJ8 dimer TTTGATCTCGCTCACA +[2632238:2632253] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) xseA (b2509) , guaB (b2508) , yfgJ (b2510)
    ... ... xseA guaB yfgJ
    39 15150239
    NC_000913.2 P0ACJ8 dimer TTTGACGGCTATCACG -[1156940:1156955] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ptsG (b1101) , ycfH (b1100) , holB (b1099) , tmk (b1098) , yceG (b1097) , pabC (b1096)
    ... ... ptsG ycfH holB tmk yceG pabC
    39 15150239
    NC_000913.2 P0ACJ8 dimer CGTGATAGCCGTCAAA +[1156940:1156955] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ptsG (b1101) , ycfH (b1100) , holB (b1099) , tmk (b1098) , yceG (b1097) , pabC (b1096)
    ... ... ptsG ycfH holB tmk yceG pabC
    39 15150239
    NC_000913.2 P0ACJ8 dimer TTTTATAGGTGTCACA +[3409646:3409661] Experimental technique details Beta-gal reporter assay - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fis (b3261) , dusB (b3260) , yhdJ (b3262)
    ... ... fis dusB yhdJ
    39 15150239
    NC_000913.3 P0ACJ8 not specified GGTGAAGGAGGTCACG -[125289:125304] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) aceF (b0115) , aceE (b0114)
    ... ... aceF aceE
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTGAGCGAGATCAAA -[2634216:2634231] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) xseA (b2509) , guaB (b2508) , guaA (b2507)
    ... ... xseA guaB guaA
    978 15150239
    NC_000913.3 P0ACJ8 not specified TTTGATCTCGCTCACA +[2634216:2634231] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) xseA (b2509) , guaB (b2508) , guaA (b2507)
    ... ... xseA guaB guaA
    978 15150239
    NC_000913.3 P0ACJ8 not specified CGTGATAGCCGTCAAA +[1157717:1157732] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) ptsG (b1101)
    ... ... ptsG
    978 15150239
    NC_000913.3 P0ACJ8 not specified TTTGACGGCTATCACG -[1157717:1157732] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) ptsG (b1101)
    ... ... ptsG
    978 15150239
    NC_000913.3 P0ACJ8 not specified TTTTATAGGTGTCACA +[3411624:3411639] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) yhdJ (b3262) , yhdU (b3263)
    ... ... yhdJ yhdU
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTAATGGATGTCACG -[4219105:4219120] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) aceK (b4016)
    ... ... aceK
    978 15150239
    NC_000913.3 P0ACJ8 not specified CGTGAGCAATATCACG +[1687185:1687200] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) fumA (b1612) , fumC (b1611) , manA (b1613) , ydgA (b1614)
    ... ... fumA fumC manA ydgA
    978 15150239
    NC_000913.3 P0ACJ8 not specified AGTGATCCAGGTCACG -[754866:754881] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) gltA (b0720) , sdhC (b0721) , sdhD (b0722) , sdhA (b0723) , sdhB (b0724)
    ... ... gltA sdhC sdhD sdhA sdhB
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTGACAAATATCACA +[4086047:4086062] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fdhD (b3895) , fdoG (b3894) , fdoH (b3893) , fdoI (b3892) , fdhE (b3891) , yiiG (b3896)
    ... ... fdhD fdoG fdoH fdoI fdhE yiiG
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTGATATTTGTCACA -[4086047:4086062] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fdhD (b3895) , fdoG (b3894) , fdoH (b3893) , fdoI (b3892) , fdhE (b3891) , yiiG (b3896)
    ... ... fdhD fdoG fdoH fdoI fdhE yiiG
    978 15150239
    NC_000913.3 P0ACJ8 not specified CGAGATAACGATCACA +[2177266:2177281] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) gatY (b2096) , gatZ (b2095) , gatA (b2094) , gatB (b2093) , gatC (b2092) , gatD (b2091)
    ... ... gatY gatZ gatA gatB gatC gatD
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTTTTCGATTTCAAA +[2177221:2177236] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) gatY (b2096) , gatZ (b2095) , gatA (b2094) , gatB (b2093) , gatC (b2092) , gatD (b2091)
    ... ... gatY gatZ gatA gatB gatC gatD
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTGCGGCAATTCACA -[2352484:2352499] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glpT (b2240) , glpQ (b2239) , glpA (b2241) , glpB (b2242) , glpC (b2243)
    ... ... glpT glpQ glpA glpB glpC
    978 15150239
    NC_000913.3 P0ACJ8 not specified TGTTATACATATCACT +[3561899:3561914] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glpE (b3425) , glpG (b3424) , glpR (b3423) , glpD (b3426)
    ... ... glpE glpG glpR glpD
    978 15150239
    NC_000913.3 P0ACJ8 not specified GGTAATTGATTTCACT -[3562870:3562885] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glpD (b3426) , glpE (b3425) , glpG (b3424) , glpR (b3423)
    ... ... glpD glpE glpG glpR
    978 15150239
    NC_000913.3 P0ACJ8 monomer CGCGATAGATTTCACG -[2350687:2350702] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpQ (b2239)
    ... ... glpQ
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGCGGCAATTCACA -[2352484:2352499] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpT (b2240) , glpQ (b2239) , glpA (b2241) , glpB (b2242) , glpC (b2243)
    ... ... glpT glpQ glpA glpB glpC
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTAACAGAGATCACA -[4246532:4246547] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) malE (b4034) , malK (b4035) , lamB (b4036)
    ... ... malE malK lamB
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGATCTCTGTTACA +[4246532:4246547] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) malE (b4034) , malK (b4035) , lamB (b4036)
    ... ... malE malK lamB
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTAACAGAGATCACA -[4246532:4246547] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) malE (b4034) , malK (b4035) , lamB (b4036)
    ... ... malE malK lamB
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGATCTCTGTTACA +[4246532:4246547] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) malE (b4034) , malK (b4035) , lamB (b4036)
    ... ... malE malK lamB
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGAGTGATTTCACA -[2240599:2240614] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) mglB (b2150) , mglA (b2149) , mglC (b2148)
    ... ... mglB mglA mglC
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGAAATCACTCACA +[2240599:2240614] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) mglB (b2150) , mglA (b2149) , mglC (b2148)
    ... ... mglB mglA mglC
    978 15150239
    NC_000913.3 P0ACJ8 monomer GGTGATCTATTTCACA -[4368514:4368529] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) aspA (b4139) , dcuA (b4138) , cutA (b4137) , dsbD (b4136) , yjdC (b4135) , pheU (b4134) , fxsA (b4140)
    ... ... aspA dcuA cutA dsbD yjdC pheU fxsA
    978 15150239
    NC_000913.3 P0ACJ8 monomer CGTAATCTGGATCACT +[4368464:4368479] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) aspA (b4139) , dcuA (b4138) , cutA (b4137) , dsbD (b4136) , yjdC (b4135) , pheU (b4134) , fxsA (b4140)
    ... ... aspA dcuA cutA dsbD yjdC pheU fxsA
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGCTACGCATGTCACA -[1078968:1078983] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) putA (b1014) , putP (b1015)
    ... ... putA putP
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGATTCGATTCACA +[3888343:3888358] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) tnaC (b3707)
    ... ... tnaC
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGAATCGAATCACA -[3888343:3888358] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) tnaC (b3707)
    ... ... tnaC
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTATTCTGCTTCACG -[3889449:3889464] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) tnaA (b3708) , tnaB (b3709) , mdtL (b3710) , yidZ (b3711)
    ... ... tnaA tnaB mdtL yidZ
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGATTCGATTCACA +[3888343:3888358] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) tnaC (b3707)
    ... ... tnaC
    978 15150239
    NC_000913.3 P0ACJ8 monomer TGTGAATCGAATCACA -[3888343:3888358] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) tnaC (b3707)
    ... ... tnaC
    978 15150239

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TTTTATGAAGCCCTTCACAGAA
    TGTAATGGATGTCACG
    CGTGAGCAATATCACG
    CGTGAGCAATATCACG
    AGTGATCCAGGTCACG
    TGTGACAAATATCACA
    CGAGATAACGATCACA
    TGTTTTCGATTTCAAA
    TGTGCGGCAATCCACA
    TGTTATACATATCACT
    GGTAATTGATTTCACT
    CGCGATAGATTTCACG
    TGTGCGGCAATTCACA
    TGTAACAGAGATCACA
    TGTAACAGAGATCACA
    TGTGATCTCTGTTACA
    TGTGAGTGATTTCACA
    TGTGAAATCACTCACA
    GGTGATCTATTTCACA
    CGTAATCTGGATCACT
    TGCTACGCATGTCACA
    TGTGATTCGATTCACA
    TGTGAATCGAATCACA
    TGTGATTCGATTCACA
    TGTGAATCGAATCACA
    GGTGAAGGAGGTCACG
    TTTGATCTCGCTCACA
    TTTGACGGCTATCACG
    CGTGATAGCCGTCAAA
    TTTTATAGGTGTCACA
    GGTGAAGGAGGTCACG
    TGTGAGCGAGATCAAA
    TTTGATCTCGCTCACA
    CGTGATAGCCGTCAAA
    TTTGACGGCTATCACG
    TTTTATAGGTGTCACA
    TGTAATGGATGTCACG
    CGTGAGCAATATCACG
    AGTGATCCAGGTCACG
    TGTGACAAATATCACA
    TGTGATATTTGTCACA
    CGAGATAACGATCACA
    TGTTTTCGATTTCAAA
    TGTGCGGCAATTCACA
    TGTTATACATATCACT
    GGTAATTGATTTCACT
    CGCGATAGATTTCACG
    TGTGCGGCAATTCACA
    TGTAACAGAGATCACA
    TGTGATCTCTGTTACA
    TGTAACAGAGATCACA
    TGTGATCTCTGTTACA
    TGTGAGTGATTTCACA
    TGTGAAATCACTCACA
    GGTGATCTATTTCACA
    CGTAATCTGGATCACT
    TGCTACGCATGTCACA
    TGTGATTCGATTCACA
    TGTGAATCGAATCACA
    TGTATTCTGCTTCACG
    TGTGATTCGATTCACA
    TGTGAATCGAATCACA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TTCTGTGAAGGGCTTCATAAAA
    TAATGTAATGGATGTCACGGCT
    TGGCGTGAGCAATATCACGACC
    TGGCGTGAGCAATATCACGACC
    AACAGTGATCCAGGTCACGATA
    AAATGTGACAAATATCACAGGT
    TTTTGTGATCGTTATCTCGATA
    GTTTGTTTTCGATTTCAAAATA
    TGCTGTGCGGCAATCCACAGAT
    TAATGTTATACATATCACTCTA
    GCAGGTAATTGATTTCACTCTC
    CTACGCGATAGATTTCACGCTG
    ATGTGTGCGGCAATTCACATTT
    TTCTGTAACAGAGATCACACAA
    TTCTGTAACAGAGATCACACAA
    TTCTGTAACAGAGATCACACAA
    ATCTGTGAGTGATTTCACAGTA
    ATCTGTGAGTGATTTCACAGTA
    AGCGGTGATCTATTTCACAAAT
    TAAAGTGATCCAGATTACGGTA
    GCTTGCTACGCATGTCACATTT
    GATTGTGATTCGATTCACATTT
    GATTGTGATTCGATTCACATTT
    GATTGTGATTCGATTCACATTT
    GATTGTGATTCGATTCACATTT
    CTCGGTGAAGGAGGTCACGCTA
    ACATGTGAGCGAGATCAAATTC
    TTGTTTGACGGCTATCACGTTT
    TTGTTTGACGGCTATCACGTTT
    CTTTTTTATAGGTGTCACAAAG
    CTCGGTGAAGGAGGTCACGCTA
    ACATGTGAGCGAGATCAAATTC
    ACATGTGAGCGAGATCAAATTC
    TTGTTTGACGGCTATCACGTTT
    TTGTTTGACGGCTATCACGTTT
    CTTTTTTATAGGTGTCACAAAG
    TAATGTAATGGATGTCACGGCT
    TGGCGTGAGCAATATCACGACC
    AACAGTGATCCAGGTCACGATA
    AAATGTGACAAATATCACAGGT
    AAATGTGACAAATATCACAGGT
    TTTTGTGATCGTTATCTCGATA
    GTTTGTTTTCGATTTCAAAATA
    ATGTGTGCGGCAATTCACATTT
    TAATGTTATACATATCACTCTA
    GCAGGTAATTGATTTCACTCTC
    CTACGCGATAGATTTCACGCTG
    ATGTGTGCGGCAATTCACATTT
    TTCTGTAACAGAGATCACACAA
    TTCTGTAACAGAGATCACACAA
    TTCTGTAACAGAGATCACACAA
    TTCTGTAACAGAGATCACACAA
    ATCTGTGAGTGATTTCACAGTA
    ATCTGTGAGTGATTTCACAGTA
    AGCGGTGATCTATTTCACAAAT
    TAAAGTGATCCAGATTACGGTA
    GCTTGCTACGCATGTCACATTT
    GATTGTGATTCGATTCACATTT
    GATTGTGATTCGATTCACATTT
    CTTTGTATTCTGCTTCACGCTG
    GATTGTGATTCGATTCACATTT
    GATTGTGATTCGATTCACATTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.