FIS - UniProtKB: P0A6R3 regulon and binding site collection of Escherichia coli


Sites are listed as curated.

GCTGCTTGGATGCCC
GGCATAGACTGTACC
GTACCCCAAAAAAAC
ACAGTCATAACAAGC
ACAAGCCATGAAAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCTGCTTGGATGCCCGAGGCA
GCCCGAGGCATAGACTGTACC
ACTGTTTTTTTGGGGTACAGT
ATGGCTTGTTATGACTGTTTT
GCGGTTTTCATGGCTTGTTAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_019062.1 P0A6R3 dimer GCTGCTTGGATGCCC -[11037:11051] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) intI1 (D616_p58022) , aadA1 (D616_p58023)
    ... ... intI1 aadA1
    483 21778209
    NC_019062.1 P0A6R3 dimer GGCATAGACTGTACC -[11020:11034] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) intI1 (D616_p58022) , aadA1 (D616_p58023)
    ... ... intI1 aadA1
    483 21778209
    NC_019062.1 P0A6R3 dimer GTACCCCAAAAAAAC -[11010:11024] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) intI1 (D616_p58022) , aadA1 (D616_p58023)
    ... ... intI1 aadA1
    483 21778209
    NC_019062.1 P0A6R3 dimer ACAGTCATAACAAGC -[10997:11011] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) intI1 (D616_p58022) , aadA1 (D616_p58023)
    ... ... intI1 aadA1
    483 21778209
    NC_019062.1 P0A6R3 dimer ACAAGCCATGAAAAC -[10988:11002] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) intI1 (D616_p58022) , aadA1 (D616_p58023) , tnpM (D616_p58024)
    ... ... intI1 aadA1 tnpM
    483 21778209

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GCTGCTTGGATGCCC
    GGCATAGACTGTACC
    GTACCCCAAAAAAAC
    ACAGTCATAACAAGC
    ACAAGCCATGAAAAC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GCTGCTTGGATGCCCGAGGCA
    GCCCGAGGCATAGACTGTACC
    ACTGTTTTTTTGGGGTACAGT
    ATGGCTTGTTATGACTGTTTT
    GCGGTTTTCATGGCTTGTTAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.