Fur - UniProtKB: P0A0S8 regulon and binding site collection of Neisseria meningitidis MC58


Sites are listed as curated.

GATAATAACTATCATTATT
TAAAATAATAATCCTTATC
TATTAGAAGTATCATTTTA
TCAAATAAGAATCGTTATC
ATATTTTATAAAAGCGAACGATAATCATACGATTAAGC
CGTATTATAACGTCTATTGTTTTACA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAATACATATATGATAATAACTATCATTATTCTTTAGT
CAATTAAAGAATGATAAGGATTATTATTTTATTTATTT
GTAGCTATAAAGTATTAGAAGTATCATTTTAAGTTCAT
CAATCATGTTATGATAACGATTCTTATTTGATTTTATA
GCTTAATCGTATGATTATCGTTCGCTTTTATAAAATAT
GAAATTGCGTATTATAACGTCTATTGTTTTACAGGGGT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003112.2 P0A0S8 not specified GATAATAACTATCATTATT +[1687712:1687730] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details S1 nuclease protection (ECO:0005666) norB (NMB1622) , pan1 (NMB1623) , NMB1624
    ... ... norB pan1 NMB1624
    467 15130126
    NC_003112.2 P0A0S8 not specified TAAAATAATAATCCTTATC +[475536:475554] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details S1 nuclease protection (ECO:0005666) tbp2 (NMB0460) , NMB0459 , tbp1 (NMB0461)
    ... ... tbp2 NMB0459 tbp1
    469 15130126
    NC_003112.2 P0A0S8 not specified TATTAGAAGTATCATTTTA +[1687821:1687839] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details S1 nuclease protection (ECO:0005666) pan1 (NMB1623) , norB (NMB1622) , NMB1624
    ... ... pan1 norB NMB1624
    470 15130126
    NC_003112.2 P0A0S8 not specified TCAAATAAGAATCGTTATC +[246469:246487] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details S1 nuclease protection (ECO:0005666) nuoA (NMB0241) , NMB0240 , NMB0239 , nuoB (NMB0242) , nuoC (NMB0243) , nuoD (NMB0244) , nuoE (NMB0245)
    ... ... nuoA NMB0240 NMB0239 nuoB nuoC nuoD nuoE
    470 15130126
    NC_003112.2 P0A0S8 not specified ATATTTTATAAAAGCGAACGATAATCATACGATTAAGC +[205650:205687] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details S1 nuclease protection (ECO:0005666) - Experimental technique details Visual sequence inspection (nan) fur (NMB0205) , NMB0204 , dapB (NMB0203) , aat (NMB0206)
    ... ... fur NMB0204 dapB aat
    690 14526014
    NC_003112.2 P0A0S8 dimer CGTATTATAACGTCTATTGTTTTACA +[205778:205803] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details S1 nuclease protection (ECO:0005666) - Experimental technique details Visual sequence inspection (nan) fur (NMB0205) , NMB0204 , dapB (NMB0203) , aat (NMB0206)
    ... ... fur NMB0204 dapB aat
    690 14526014

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GATAATAACTATCATTATT
    TAAAATAATAATCCTTATC
    TATTAGAAGTATCATTTTA
    TCAAATAAGAATCGTTATC
    ATATTTTATAAAAGCGAACGATAATCATACGATTAAGC
    CGTATTATAACGTCTATTGTTTTACA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AAATACATATATGATAATAACTATCATTATTCTTTAGT
    CAATTAAAGAATGATAAGGATTATTATTTTATTTATTT
    GTAGCTATAAAGTATTAGAAGTATCATTTTAAGTTCAT
    CAATCATGTTATGATAACGATTCTTATTTGATTTTATA
    GCTTAATCGTATGATTATCGTTCGCTTTTATAAAATAT
    GAAATTGCGTATTATAACGTCTATTGTTTTACAGGGGT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.