CcpA - UniProtKB: Q18AR8 regulon and binding site collection of Clostridium difficile 630


Sites are listed as curated.

AGTAAAACGGTTTCCT
AAGAAAACGTTATTAC
GAGAAAATGTTTACAG
AGGAAAACGTTATGCT
TCAAAAAGATTTTCAT
AAGAAAACGTTAAGCA
AGGAAAACGTATTATA
GAGAAAAGGATTTCTA
AGAAAAACGTTAACTT
ATGATAACATTTTCTT
GGGAAAACGATACCAA
GAGAAAAAGACATCAT
AGGAAATGGTATTTGT
AAGAAAACCTTATCTA
GAGAAAAGGTTTCCAA
GAAAAAATGTTTTTTT
TGTAAAAAGTTTAGTT
AGGAAATAGTTAACTT
TAGAAAACGTTTTAAA
AAGAAAGCGTTTTGAA
AAGATAACGATTGCTT
AAGAAAACGATTTTGT
TAGAAAAGGTTATCAT
TTGAAAACGTTTAGTG
AGGAAATAGATAAGTT
GAGAAAAGGTTTTGTT
TATAAAACGTTTTCTT
AAATAAAGGTTTTCTT
TAGAAAATGTTTGCAG
GAGAAAAAATTATAAA
AAGAAAAAGTTTTCAT
AAGAAATCGTTTCTTT
GGGAAAACATTTTCTT
AAGATAAAATTTTTTT
CAGAAAAGGTTTGCAA
GAGAAAAGGTATGCAA
TTGAAAAAGATTACTA
TGGAAATAGTTTTCTT
AGGATAACGTTATCAT
GAGAAAAAATATACAA
ATGTAAACGTTATCTT
AAGAAAAAAATAGGTT
GGGAAAACGTTAACAA
TAGATAAGGTTTTCTT
ATGAAAAAGTTTTCTT
AGGAGAACATTATCAA
TAGATTTGGTTTAAAT
GAGTTAACGTTTTCAA
GAGAAAATGTTTACAA
CTGATAACGTTTTCTA
AAGAAAAGGCTTTCTA
AAGAAAACATTTTCAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AGTAAAACGGTTTCCT
GTAATAACGTTTTCTT
GAGAAAATGTTTACAG
AGGAAAACGTTATGCT
TCAAAAAGATTTTCAT
AAGAAAACGTTAAGCA
TATAATACGTTTTCCT
GAGAAAAGGATTTCTA
AGAAAAACGTTAACTT
AAGAAAATGTTATCAT
GGGAAAACGATACCAA
GAGAAAAAGACATCAT
ACAAATACCATTTCCT
TAGATAAGGTTTTCTT
GAGAAAAGGTTTCCAA
GAAAAAATGTTTTTTT
TGTAAAAAGTTTAGTT
AAGTTAACTATTTCCT
TAGAAAACGTTTTAAA
AAGAAAGCGTTTTGAA
AAGATAACGATTGCTT
ACAAAATCGTTTTCTT
TAGAAAAGGTTATCAT
TTGAAAACGTTTAGTG
AGGAAATAGATAAGTT
GAGAAAAGGTTTTGTT
TATAAAACGTTTTCTT
AAATAAAGGTTTTCTT
TAGAAAATGTTTGCAG
GAGAAAAAATTATAAA
AAGAAAAAGTTTTCAT
AAAGAAACGATTTCTT
AAGAAAATGTTTTCCC
AAAAAAATTTTATCTT
CAGAAAAGGTTTGCAA
GAGAAAAGGTATGCAA
TAGTAATCTTTTTCAA
AAGAAAACTATTTCCA
AGGATAACGTTATCAT
GAGAAAAAATATACAA
AAGATAACGTTTACAT
AAGAAAAAAATAGGTT
GGGAAAACGTTAACAA
TAGATAAGGTTTTCTT
AAGAAAACTTTTTCAT
AGGAGAACATTATCAA
TAGATTTGGTTTAAAT
GAGTTAACGTTTTCAA
GAGAAAATGTTTACAA
TAGAAAACGTTATCAG
AAGAAAAGGCTTTCTA
AAGAAAACATTTTCAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_009089.1 Q18AR8 not specified AGTAAAACGGTTTCCT +[359054:359069] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) rbsR (CD630_02980) , rbsK (CD630_02990) , rbsB (CD630_03000) , rbsA (CD630_03010) , rbsC (CD630_03020)
    ... ... rbsR rbsK rbsB rbsA rbsC
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAACGTTATTAC +[340705:340720] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_02791
    ... ... CD630_02791
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAATGTTTACAG +[260614:260629] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_02010 , CD630_02000
    ... ... CD630_02010 CD630_02000
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAAAACGTTATGCT +[467021:467036] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) hadA (CD630_03950) , ldhA (CD630_03940) , hadI (CD630_03960) , hadB (CD630_03970) , hadC (CD630_03980) , acdB (CD630_03990) , etfB1 (CD630_04000) , etfA1 (CD630_04010)
    ... ... hadA ldhA hadI hadB hadC acdB etfB1 etfA1
    936 22989714
    NC_009089.1 Q18AR8 not specified TCAAAAAGATTTTCAT +[556273:556288] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_04670 , CD630_04680 , CD630_04690
    ... ... CD630_04670 CD630_04680 CD630_04690
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAACGTTAAGCA +[583419:583434] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_04940 , CD630_04960 , CD630_04970 , CD630_04980 , CD630_04981 , CD630_04990 , CD630_04991 , CD630_05000 , CD630_05010 , CD630_05020 , CD630_05030 , CD630_05040 , CD630_05060
    ... ... CD630_04940 CD630_04960 CD630_04970 CD630_04980 CD630_04981 CD630_04990 CD630_04991 CD630_05000 CD630_05010 CD630_05020 CD630_05030 CD630_05040 CD630_05060
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAAAACGTATTATA -[635640:635655] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_05300 , CD630_05290 , CD630_05280 , CD630_05310
    ... ... CD630_05300 CD630_05290 CD630_05280 CD630_05310
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAGGATTTCTA +[688002:688017] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_05760
    ... ... CD630_05760
    936 22989714
    NC_009089.1 Q18AR8 not specified AGAAAAACGTTAACTT +[693074:693089] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) gapN (CD630_05800) , CD630_05790
    ... ... gapN CD630_05790
    936 22989714
    NC_009089.1 Q18AR8 not specified ATGATAACATTTTCTT +[821477:821492] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_06790 , CD630_06800 , CD630_06810 , CD630_06820 , CD630_06830
    ... ... CD630_06790 CD630_06800 CD630_06810 CD630_06820 CD630_06830
    936 22989714
    NC_009089.1 Q18AR8 not specified GGGAAAACGATACCAA +[905427:905442] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) glpK1 (CD630_07410) , CD630_07420 , CD630_07400
    ... ... glpK1 CD630_07420 CD630_07400
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAAGACATCAT +[949315:949330] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_07790 , CD630_07800
    ... ... CD630_07790 CD630_07800
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAAATGGTATTTGT +[1009604:1009619] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) acnB (CD630_08330) , icd (CD630_08340)
    ... ... acnB icd
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAACCTTATCTA +[1029515:1029530] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) oppC (CD630_08540) , oppA (CD630_08550) , oppD (CD630_08560) , oppF (CD630_08570)
    ... ... oppC oppA oppD oppF
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAGGTTTCCAA -[1313003:1313018] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_11160 , CD630_11150 , CD630_11140 , CD630_11130 , CD630_11120 , CD630_11110 , CD630_11100 , CD630_11090 , CD630_11080 , CD630_11071 , CD630_11070 , CD630_11061 , topB (CD630_11060) , CD630_11050 , CD630_11042 , CD630_11041
    ... ... CD630_11160 CD630_11150 CD630_11140 CD630_11130 CD630_11120 CD630_11110 CD630_11100 CD630_11090 CD630_11080 CD630_11071 CD630_11070 CD630_11061 topB CD630_11050 CD630_11042 CD630_11041
    936 22989714
    NC_009089.1 Q18AR8 not specified GAAAAAATGTTTTTTT +[1336419:1336434] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) rnfC (CD630_11370) , rnfD (CD630_11380) , rnfG (CD630_11390) , rnfE (CD630_11400) , rnfA (CD630_11410) , rnfB (CD630_11420)
    ... ... rnfC rnfD rnfG rnfE rnfA rnfB
    936 22989714
    NC_009089.1 Q18AR8 not specified TGTAAAAAGTTTAGTT +[1412555:1412570] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) spo0A (CD630_12140)
    ... ... spo0A
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAAATAGTTAACTT +[1531869:1531884] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_13210 , dapG (CD630_13220) , tepA (CD630_13230) , ftsK (CD630_13240) , CD630_13250 , rimO (CD630_13260) , pgsA (CD630_13270)
    ... ... CD630_13210 dapG tepA ftsK CD630_13250 rimO pgsA
    936 22989714
    NC_009089.1 Q18AR8 not specified TAGAAAACGTTTTAAA +[1550454:1550469] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_13360 , CD630_13370 , CD630_13380
    ... ... CD630_13360 CD630_13370 CD630_13380
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAGCGTTTTGAA +[1603651:1603666] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_13850 , CD630_13840 , CD630_13830 , CD630_13860 , CD630_13870
    ... ... CD630_13850 CD630_13840 CD630_13830 CD630_13860 CD630_13870
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGATAACGATTGCTT +[1714224:1714239] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) feoA (CD630_14770) , feoA (CD630_14780) , feoB1 (CD630_14790) , CD630_14800
    ... ... feoA feoA feoB1 CD630_14800
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAACGATTTTGT +[1781919:1781934] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_15360 , sseA (CD630_15350) , aspB (CD630_15370)
    ... ... CD630_15360 sseA aspB
    936 22989714
    NC_009089.1 Q18AR8 not specified TAGAAAAGGTTATCAT +[1838920:1838935] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_15860 , CD630_15870 , CD630_15880 , CD630_15890
    ... ... CD630_15860 CD630_15870 CD630_15880 CD630_15890
    936 22989714
    NC_009089.1 Q18AR8 not specified TTGAAAACGTTTAGTG +[1854850:1854865] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) thiD (CD630_15990) , thiM (CD630_16000) , thiE (CD630_16010) , CD630_16020
    ... ... thiD thiM thiE CD630_16020
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAAATAGATAAGTT +[1925175:1925190] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) gcvPB (CD630_16580) , gcvTPA (CD630_16570)
    ... ... gcvPB gcvTPA
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAGGTTTTGTT +[2045777:2045792] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) CD630_17680 , CD630_17671
    ... ... CD630_17680 CD630_17671
    936 22989714
    NC_009089.1 Q18AR8 not specified TATAAAACGTTTTCTT -[2198622:2198637] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_18930 , CD630_18940
    ... ... CD630_18930 CD630_18940
    936 22989714
    NC_009089.1 Q18AR8 not specified AAATAAAGGTTTTCTT -[2233586:2233601] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) spoVS (CD630_19350)
    ... ... spoVS
    936 22989714
    NC_009089.1 Q18AR8 not specified TAGAAAATGTTTGCAG +[2440342:2440357] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_21110 , CD630_21100
    ... ... CD630_21110 CD630_21100
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAAATTATAAA -[2515100:2515115] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_21730 , CD630_21720
    ... ... CD630_21730 CD630_21720
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAAAGTTTTCAT -[2593113:2593128] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) nanE (CD630_22410) , nanA (CD630_22400) , CD630_22390 , CD630_22380
    ... ... nanE nanA CD630_22390 CD630_22380
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAATCGTTTCTTT -[2646466:2646481] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_22800 , CD630_22790 , araD (CD630_22780) , CD630_22770
    ... ... CD630_22800 CD630_22790 araD CD630_22770
    936 22989714
    NC_009089.1 Q18AR8 not specified GGGAAAACATTTTCTT -[2689648:2689663] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) CD630_23270 , CD630_23260 , CD630_23250 , CD630_23240 , CD630_23230 , tkt (CD630_23220) , tkt' (CD630_23210)
    ... ... CD630_23270 CD630_23260 CD630_23250 CD630_23240 CD630_23230 tkt tkt'
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGATAAAATTTTTTT -[2713816:2713831] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_23440 , cat1 (CD630_23430) , sucD (CD630_23420) , CD630_23450
    ... ... CD630_23440 cat1 sucD CD630_23450
    936 22989714
    NC_009089.1 Q18AR8 not specified CAGAAAAGGTTTGCAA -[2716800:2716815] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_23470 , CD630_23460
    ... ... CD630_23470 CD630_23460
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAGGTATGCAA -[2804903:2804918] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_24290 , CD630_24280 , CD630_24270
    ... ... CD630_24290 CD630_24280 CD630_24270
    936 22989714
    NC_009089.1 Q18AR8 not specified TTGAAAAAGATTACTA -[2863604:2863619] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ung (CD630_24810) , CD630_24800
    ... ... ung CD630_24800
    936 22989714
    NC_009089.1 Q18AR8 not specified TGGAAATAGTTTTCTT -[3009208:3009223] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) cstA (CD630_26000)
    ... ... cstA
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGATAACGTTATCAT +[3031940:3031955] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_26250 , CD630_26240 , CD630_26230 , sepF (CD630_26220) , CD630_26210 , CD630_26200 , CD630_26190
    ... ... CD630_26250 CD630_26240 CD630_26230 sepF CD630_26210 CD630_26200 CD630_26190
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAAAATATACAA -[3034722:3034737] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_26260
    ... ... CD630_26260
    936 22989714
    NC_009089.1 Q18AR8 not specified ATGTAAACGTTATCTT +[3094027:3094042] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) scoB (CD630_26780) , bdhA (CD630_26790) , CD630_26800
    ... ... scoB bdhA CD630_26800
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAAAAATAGGTT -[3113089:3113104] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_26930
    ... ... CD630_26930
    936 22989714
    NC_009089.1 Q18AR8 not specified GGGAAAACGTTAACAA -[3124424:3124439] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) brnQ (CD630_27020)
    ... ... brnQ
    936 22989714
    NC_009089.1 Q18AR8 not specified TAGATAAGGTTTTCTT +[3368186:3368201] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_28790 , fhuD (CD630_28780) , fhuB (CD630_28770) , fhuG (CD630_28760) , fhuC (CD630_28750) , CD630_28740
    ... ... CD630_28790 fhuD fhuB fhuG fhuC CD630_28740
    936 22989714
    NC_009089.1 Q18AR8 not specified ATGAAAAAGTTTTCTT -[3373181:3373196] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) celA (CD630_28840) , celB (CD630_28830) , celF (CD630_28820) , celG (CD630_28810) , celC (CD630_28800)
    ... ... celA celB celF celG celC
    936 22989714
    NC_009089.1 Q18AR8 not specified AGGAGAACATTATCAA -[3711111:3711126] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) cggR (CD630_31750) , gapA (CD630_31740)
    ... ... cggR gapA
    936 22989714
    NC_009089.1 Q18AR8 not specified TAGATTTGGTTTAAAT -[3726184:3726199] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) dpaL (CD630_31840) , CD630_31830 , CD630_31820 , CD630_31810
    ... ... dpaL CD630_31830 CD630_31820 CD630_31810
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGTTAACGTTTTCAA -[3766327:3766342] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_32180 , CD630_32170
    ... ... CD630_32180 CD630_32170
    936 22989714
    NC_009089.1 Q18AR8 not specified GAGAAAATGTTTACAA -[3795981:3795996] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) prdA (CD630_32440) , CD630_32430 , prdB (CD630_32410) , prdD (CD630_32400) , prdE (CD630_32390) , CD630_32380 , prdF (CD630_32370) , CD630_32360
    ... ... prdA CD630_32430 prdB prdD prdE CD630_32380 prdF CD630_32360
    936 22989714
    NC_009089.1 Q18AR8 not specified CTGATAACGTTTTCTA +[3984771:3984786] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) CD630_34060 , CD630_34070
    ... ... CD630_34060 CD630_34070
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAAGGCTTTCTA -[4258319:4258334] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) rlmH (CD630_36490) , licB (CD630_36480) , licA (CD630_36470)
    ... ... rlmH licB licA
    936 22989714
    NC_009089.1 Q18AR8 not specified AAGAAAACATTTTCAT -[4275736:4275751] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) CD630_36640
    ... ... CD630_36640
    936 22989714

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AGTAAAACGGTTTCCT
    AAGAAAACGTTATTAC
    GAGAAAATGTTTACAG
    AGGAAAACGTTATGCT
    TCAAAAAGATTTTCAT
    AAGAAAACGTTAAGCA
    AGGAAAACGTATTATA
    GAGAAAAGGATTTCTA
    AGAAAAACGTTAACTT
    ATGATAACATTTTCTT
    GGGAAAACGATACCAA
    GAGAAAAAGACATCAT
    AGGAAATGGTATTTGT
    AAGAAAACCTTATCTA
    GAGAAAAGGTTTCCAA
    GAAAAAATGTTTTTTT
    TGTAAAAAGTTTAGTT
    AGGAAATAGTTAACTT
    TAGAAAACGTTTTAAA
    AAGAAAGCGTTTTGAA
    AAGATAACGATTGCTT
    AAGAAAACGATTTTGT
    TAGAAAAGGTTATCAT
    TTGAAAACGTTTAGTG
    AGGAAATAGATAAGTT
    GAGAAAAGGTTTTGTT
    TATAAAACGTTTTCTT
    AAATAAAGGTTTTCTT
    TAGAAAATGTTTGCAG
    GAGAAAAAATTATAAA
    AAGAAAAAGTTTTCAT
    AAGAAATCGTTTCTTT
    GGGAAAACATTTTCTT
    AAGATAAAATTTTTTT
    CAGAAAAGGTTTGCAA
    GAGAAAAGGTATGCAA
    TTGAAAAAGATTACTA
    TGGAAATAGTTTTCTT
    AGGATAACGTTATCAT
    GAGAAAAAATATACAA
    ATGTAAACGTTATCTT
    AAGAAAAAAATAGGTT
    GGGAAAACGTTAACAA
    TAGATAAGGTTTTCTT
    ATGAAAAAGTTTTCTT
    AGGAGAACATTATCAA
    TAGATTTGGTTTAAAT
    GAGTTAACGTTTTCAA
    GAGAAAATGTTTACAA
    CTGATAACGTTTTCTA
    AAGAAAAGGCTTTCTA
    AAGAAAACATTTTCAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AGTAAAACGGTTTCCT
    GTAATAACGTTTTCTT
    GAGAAAATGTTTACAG
    AGGAAAACGTTATGCT
    TCAAAAAGATTTTCAT
    AAGAAAACGTTAAGCA
    TATAATACGTTTTCCT
    GAGAAAAGGATTTCTA
    AGAAAAACGTTAACTT
    AAGAAAATGTTATCAT
    GGGAAAACGATACCAA
    GAGAAAAAGACATCAT
    ACAAATACCATTTCCT
    TAGATAAGGTTTTCTT
    GAGAAAAGGTTTCCAA
    GAAAAAATGTTTTTTT
    TGTAAAAAGTTTAGTT
    AAGTTAACTATTTCCT
    TAGAAAACGTTTTAAA
    AAGAAAGCGTTTTGAA
    AAGATAACGATTGCTT
    ACAAAATCGTTTTCTT
    TAGAAAAGGTTATCAT
    TTGAAAACGTTTAGTG
    AGGAAATAGATAAGTT
    GAGAAAAGGTTTTGTT
    TATAAAACGTTTTCTT
    AAATAAAGGTTTTCTT
    TAGAAAATGTTTGCAG
    GAGAAAAAATTATAAA
    AAGAAAAAGTTTTCAT
    AAAGAAACGATTTCTT
    AAGAAAATGTTTTCCC
    AAAAAAATTTTATCTT
    CAGAAAAGGTTTGCAA
    GAGAAAAGGTATGCAA
    TAGTAATCTTTTTCAA
    AAGAAAACTATTTCCA
    AGGATAACGTTATCAT
    GAGAAAAAATATACAA
    AAGATAACGTTTACAT
    AAGAAAAAAATAGGTT
    GGGAAAACGTTAACAA
    TAGATAAGGTTTTCTT
    AAGAAAACTTTTTCAT
    AGGAGAACATTATCAA
    TAGATTTGGTTTAAAT
    GAGTTAACGTTTTCAA
    GAGAAAATGTTTACAA
    TAGAAAACGTTATCAG
    AAGAAAAGGCTTTCTA
    AAGAAAACATTTTCAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.