Curation Information

Publication
Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi.;van Kessel JC, Ulrich LE, Zhulin IB, Bassler BL;mBio 2013 Jul 9; 4(4):1 [23839217]
TF
LuxR [A7MXJ7, view regulon]
Reported TF sp.
Vibrio campbellii ATCC BAA-1116
Reported site sp.
Vibrio campbellii ATCC BAA-1116
Created by
Elliot White
Curation notes
-

Experimental Process

Authors used ChIP-seq to identify LuxR binding sites, and then cross-referenced that with a DNA-array that assayed LuxR regulation. Sites, though not reported in the paper, were derived from a PSSM matrix supplied by the author.

ChIP assay conditions
To identify the HCD genes controlled by LuxR, the authors compared the profile of a ΔluxO ΔaphA strain to that of a ΔluxO ΔaphA ΔluxR strain
ChIP notes
Plasmids expressing either FLAG-luxR (pAP116) or FLAG-luxR R17C (pST012; a DNA binding-defective luxR mutant) and empty vector controls (pSLS3 or pJV139) were conjugated into a V. harveyi ΔluxR strain (KM669). The ChIP protocol is based on previously published methods (44) and the Affymetrix ChIP assay protocol with several modifications. Overnight cultures were diluted 1:50,000 and grown for 16 h at 30°C. Fifty OD600 units of cells were cross-linked and washed as previously described (44), and cells were lysed in 1 ml of lysis buffer (1× protease inhibitors [Sigma], 50 µg ml−1 lysozyme, 1× Bugbuster, 1% Triton X-100, and 1 mM phenylmethylsulfonyl fluoride [PMSF]) for 20 min at room temperature on a rotator. Following lysis, the DNA was sheared by sonication to an average size of 100 to 1,000 bp. The supernatant was clarified at 13,000 rpm for 10 min at 4°C. Immunoprecipitation reaction mixtures contained a 200-µl aliquot of input sample, 800 µl of IP buffer (50 mM HEPES-KOH, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, and 1 mM PMSF), and 40 µl EZ-view anti-FLAG agarose beads (Sigma) (equilibrated in Tris-buffered saline [TBS]) and were carried out for 2 h at room temperature on a rotator. Following immunoprecipitation, beads were collected and washed (Affymetrix ChIP assay protocol). Immunoprecipitated complexes were eluted, and cross-links were reversed as described elsewhere (Affymetrix ChIP assay protocol). Samples (input DNA and IP DNA) were analyzed by qRT-PCR to assess the quality of the immunoprecipitation from four independent experiments. DNA from representative ChIP samples was prepared for sequencing using the Illumina ChIP-seq sample prep kit and verified by qRT-PCR. The following ChIP samples were sequenced: the input DNA and IP DNA from FLAG-luxR (pAP116), IP DNA from FLAG-luxR R17C (pST012), and input DNA and IP DNA from an empty vector control (pJV139). See the supplemental material for a description of ChIP-seq data analysis procedures.

Transcription Factor Binding Sites


TTTTGATAAAAAAGTCAGT
TACTGACTTTTTTATCAAA
TATTGATTCATAAGTCAAT
AATTGACTTATGAATCAAT
TATTGTTTTTAATAACAAT
TATTGTTATTAAAAACAAT
TATTGATGTTTCTGTCCAA
TATTGATAGCTCTAACTGT
AATTGATAACTTTGTTTGT
TAGTGATAATAGTCACACT
AAGTGTGACTATTATCACT
TGATGATTTATTTATCACT
AAGTGATAAATAAATCATC
TATTGATAACAATAAAACC
TAATGATAATTTTCATGAT
AATTATTCATTTTATCAAT
AATTGATAAAATGAATAAT
AATTAATAATTCTCATTGT
TATTGATAATAATGTAATC
TATTAATTATTTACACAAC
TAGTGAGAATGTTCACAAT
AATTGTGAACATTCTCACT
AATTGTTTTTTTTGAAAGT
TTTTGTTTTTTTTGTAATT
AATTATTGTTTTTGAAAGT
TATTGATAGGTTTAATAGT
AATTGATAGGATTAACATC
AATTGATAAGTCAATGATT
TAATGATTTTTGTGTAAAT
TATTTACACAAAAATCATT
TATTGTGTCTTGTGTCACT
ATTTAACAGTTTACTCATT
AATTGTTATCATGATTATT
TAGTGAGTGGTTTGTCATT
TATTATCATTTTTGTAAAT
TATTTACAAAAATGATAAT
TATCGTTAGCTTTGTCATA
TACTGATGGTTTTATTTCC
TATTAACGATTTAGTTAGT
TATTGATGTTGCCATCATT
TATTGATGGAACTAATGAT
AATTGATGTTTTTATTATG
AATTCACAAAATTAACAAT
AATTGTTAATTTTGTGAAT
AATTGATGAATTTATTTAT
AATTGTCCATATTGTCACT
TATTGATAATTTACTAGAC
TAGTGTTCATCTTGTCATT
TATTAACTTTTTTGTCAGT
TACTGACAAAAAAGTTAAT
AATAGTCAGTGTTGTCATT
TAGTGTGATATGTATCAAT
TATTGATACATATCACACT
TTTTTACATAATTATCATT
TATTGACAGAAATATCACT
CAGTGATATTTCTGTCAAT
TATTGATAAGGTTATTTTC
TATTGATAAGTTTATGAAT
AATTCATAAACTTATCAAT
AATTGATAACTTTGTAGGT
AAGTGACAAAAAACTCATT
TATTGATGATTATGTAATT
AATTGTTAATTAAATAGAT
TACTGATAAAAAAGAAATC
AAATGATATATTTAACATT
AAATGTTAAATATATCATT
AATTGATGCTTTTGTATTT
TATTGATAACTTTGTTCAA
TATTGTCTAATTTATCGGT
TACCGATAAATTAGACAAT
TTTCGACGATTTTGTTAAT
TATTGTTATTTCTGATGCT
TACTGATAGTTTTGATTTC
TATTGATATTTTTAACTTG
TAGTGATAAAGTAGTCACT
TAATGACAAGTTTAATATT
TATTAATTTCGTTGTTATT
TATTGATGAATTTATAGTT
TATTGTCATTATTGGTGAT
TACTACGAATATTGTCATT
AATTAACAACTTTGATAGC
AATTGAGTATTTTGTTGTG
TATTAATTAAATGCTTAAT
TCTTGTTAGTTTTGAAAGC
TAATGTTAATTCTATAAGT
TGTTGATTAAATTGTCAAA
TAATTATATTTTTATAATT
TAGTGACAATATAGTCATT
AAATGACTATATTGTCACT
TTTTAATATTTATGTCAGT
TGCTGATTTTTTTGGCATT
TATCGCTTTATATATTATT
TATTTATTATTCTATTTCT
TACTGATAACTTTAGTATT
TATTATCAATTAAGTCATT
TATTAACTTATTTATTTGT
TACAAATAAATAAGTTAAT
AACTGATGACTTTGTTCTT
AAGTGTGACTTTTAACATT
TATTGAGGATATTATCAGC
AACTGATTTGATTGTTATT
AATTAATAAAATGGTTAAC
TATCGATAGGTTTATTTTT
AATTGATATTCCAATTATT
TTGTGACAGTTCTATCGTT
TATTGATAATGTAAATTAT
AATTATTGATAATGTAAAT
TACTGTTGAATTTGTGAAC
AATCAACAGAATTGTCATT
TCTTGATCAATTAATCATT
TATTAATAGTAAAGTCTAT
TATAGACTTTACTATTAAT
TATTGAGTCAATAAACAAT
AATAGTTAGTTAAATCAGT
TATTGACTCAATAGTTAGT
AATTGCTATTAGTCTTATT
TATTGTGTTGATTGATATT
ATTTGAGATTGTTGTCATT
AATTTATAAATCTATTTAT
TATAGACCTTTTTAATAAT
TATAAATAGATTTATAAAT
TTTAGATAAATAACTAATT
TATTGACAAAAAACACATC
TTTTGTCAATATAATGAAT
TATTATGGTTTTTGTTTTT
TACTTTTAGAATTGTCAAT
AATTGACAATTCTAAAAGT
TGCTGACTATAAAGTCATT
AACTGACATTTTTGTTTTC
AATTGATGATGTTATTTAT
TATTTATATTTATATCATT
AAATGATATAAATATAAAT
TATAGTTTGATTTATTTAT
TAATGTTATTTGTAACACT
TAGTGTTACAAATAACATT
TAGTGATAATTCAATCATT
AAATGATTGAATTATCACT
TAATGATATTAATAAAATT
TACTGATGCATGTATCGGT
TACTGAGAATTTGATTGCT
CAGAGATACTTTTATCATT
TTCTGATTAATCTGTCGAT
TAGTGATTGCTTTCATGAT
TTTTGATAAGAATGACAAT
TATTGTCATTCTTATCAAA
TACTGACAAAAGCATCATT
AAATGATGCTTTTGTCAGT
AATTGATAGGTTGATCCTT
TCTTGATAGTTTTATAGGT
AATAGATTACTTAGTCACT
TATTAATAGATTACTTAGT
TATTGATAATTTTCATAGA
TATAGATACGTTTGTAAAT
TATTAATATATCTATAACT
TATAGATATATTAATAAGT
AAGTTATAGATATATTAAT
TATAGTTAATTAAATCAAT
AATTGATTTAATTAACTAT
TATTCATGCATTTGTAATT
TTTTGTTAATTTTATTAAC
TATTGTTAGTATTGTTTTT
TTTTAATGTCATTCTCATT
TACTGATAACTTGAACACC
TTTTCATTAATTTATCATC
TATTGAGCATTCTATAAAT
TATTATTAGTTATATTGTT
TACTAATACATTTATCAGA
TTCTGATAAATGTATTAGT
TATTGTTAAAATAATTATT
TTTTGATAGATAAGATTTT
TATTAATAATTTAGAAAGT
TATTGAGTAAATTGACACC
TTTTGATACCTTTATTGCC
TATCGATAAAATTGTCTGC
AATAGATATCGTTGACATT
ACGTGATAGAATTGTAAAT
AATTGATGATAAAATTGTC
TATTAACTTAATTGTAGAT
TATTGATGGTTATGTCTTT
TTCTGATACTTTGCTTAGT
TGTTGATATTTATAGCTTT
TATTGTTTGTTTTGTTTTC
AAGTGAGGTATTTATCAAT
TATTGATAAATACCTCACT
AAATGATCATTTTATAAAT
TTTTGTTATTTATATCATT
AGGTGATTATTTTGTTATT
TTTTAATATTCTTATCACT
TTTTGTTATTTTAAATTAT
ATTTGTGTTTTTTGTTATT
AACTTATATTTTTGTTATT
TAGTGATTACTTACTTATT
TACTGTTAGTTTGAACGTT
TATTTATCGATTTATCACT
TAGTGATAAATCGATAAAT
TGTTGATATGTCTGACACT
TATTAATAATTTCATCAGG
TCCTGACAACTTTGTCCTT
TACTGACAATTGACATATT
CCTTGATATTTTTGTCTAT
ATTAGATAAATTTGTTAAC
TATTATTAGATTAATAACT
AATTGATGGCTTAGTTATT
TTTTGATAAAAAAGTCAGT
TACTGACTTTTTTATCAAA
TATTGATTCATAAGTCAAT
AATTGACTTATGAATCAAT
TATTGTTTTTAATAACAAT
TATTGTTATTAAAAACAAT
TATTGATGTTTCTGTCCAA
TATTGATAGCTCTAACTGT
AATTGATAACTTTGTTTGT
TAGTGATAATAGTCACACT
AAGTGTGACTATTATCACT
TGATGATTTATTTATCACT
AAGTGATAAATAAATCATC
TATTGATAACAATAAAACC
TAATGATAATTTTCATGAT
AATTATTCATTTTATCAAT
AATTGATAAAATGAATAAT
AATTAATAATTCTCATTGT
TATTGATAATAATGTAATC
TATTAATTATTTACACAAC
TAGTGAGAATGTTCACAAT
AATTGTGAACATTCTCACT
AATTGTTTTTTTTGAAAGT
TTTTGTTTTTTTTGTAATT
AATTATTGTTTTTGAAAGT
TATTGATAGGTTTAATAGT
AATTGATAGGATTAACATC
AATTGATAAGTCAATGATT
TAATGATTTTTGTGTAAAT
TATTTACACAAAAATCATT
TATTGTGTCTTGTGTCACT
ATTTAACAGTTTACTCATT
AATTGTTATCATGATTATT
TAGTGAGTGGTTTGTCATT
TATTATCATTTTTGTAAAT
TATTTACAAAAATGATAAT
TATCGTTAGCTTTGTCATA
TACTGATGGTTTTATTTCC
TATTAACGATTTAGTTAGT
TATTGATGTTGCCATCATT
TATTGATGGAACTAATGAT
AATTGATGTTTTTATTATG
AATTCACAAAATTAACAAT
AATTGTTAATTTTGTGAAT
AATTGATGAATTTATTTAT
AATTGTCCATATTGTCACT
TATTGATAATTTACTAGAC
TAGTGTTCATCTTGTCATT
TATTAACTTTTTTGTCAGT
TACTGACAAAAAAGTTAAT
AATAGTCAGTGTTGTCATT
TAGTGTGATATGTATCAAT
TATTGATACATATCACACT
TTTTTACATAATTATCATT
TATTGACAGAAATATCACT
CAGTGATATTTCTGTCAAT
TATTGATAAGGTTATTTTC
TATTGATAAGTTTATGAAT
AATTCATAAACTTATCAAT
AATTGATAACTTTGTAGGT
AAGTGACAAAAAACTCATT
TATTGATGATTATGTAATT
AATTGTTAATTAAATAGAT
TACTGATAAAAAAGAAATC
AAATGATATATTTAACATT
AAATGTTAAATATATCATT
AATTGATGCTTTTGTATTT
TATTGATAACTTTGTTCAA
TATTGTCTAATTTATCGGT
TACCGATAAATTAGACAAT
TTTCGACGATTTTGTTAAT
TATTGTTATTTCTGATGCT
TACTGATAGTTTTGATTTC
TATTGATATTTTTAACTTG
TAGTGATAAAGTAGTCACT
TAATGACAAGTTTAATATT
TATTAATTTCGTTGTTATT
TATTGATGAATTTATAGTT
TATTGTCATTATTGGTGAT
TACTACGAATATTGTCATT
AATTAACAACTTTGATAGC
AATTGAGTATTTTGTTGTG
TATTAATTAAATGCTTAAT
TCTTGTTAGTTTTGAAAGC
TAATGTTAATTCTATAAGT
TGTTGATTAAATTGTCAAA
TAATTATATTTTTATAATT
TAGTGACAATATAGTCATT
AAATGACTATATTGTCACT
TTTTAATATTTATGTCAGT
TGCTGATTTTTTTGGCATT
TATCGCTTTATATATTATT
TATTTATTATTCTATTTCT
TACTGATAACTTTAGTATT
TATTATCAATTAAGTCATT
TATTAACTTATTTATTTGT
TACAAATAAATAAGTTAAT
AACTGATGACTTTGTTCTT
AAGTGTGACTTTTAACATT
TATTGAGGATATTATCAGC
AACTGATTTGATTGTTATT
AATTAATAAAATGGTTAAC
TATCGATAGGTTTATTTTT
AATTGATATTCCAATTATT
TTGTGACAGTTCTATCGTT
TATTGATAATGTAAATTAT
AATTATTGATAATGTAAAT
TACTGTTGAATTTGTGAAC
AATCAACAGAATTGTCATT
TCTTGATCAATTAATCATT
TATTAATAGTAAAGTCTAT
TATAGACTTTACTATTAAT
TATTGAGTCAATAAACAAT
AATAGTTAGTTAAATCAGT
TATTGACTCAATAGTTAGT
AATTGCTATTAGTCTTATT
TATTGTGTTGATTGATATT
ATTTGAGATTGTTGTCATT
AATTTATAAATCTATTTAT
TATAGACCTTTTTAATAAT
TATAAATAGATTTATAAAT
TTTAGATAAATAACTAATT
TATTGACAAAAAACACATC
TTTTGTCAATATAATGAAT
TATTATGGTTTTTGTTTTT
TACTTTTAGAATTGTCAAT
AATTGACAATTCTAAAAGT
TGCTGACTATAAAGTCATT
AACTGACATTTTTGTTTTC
AATTGATGATGTTATTTAT
TATTTATATTTATATCATT
AAATGATATAAATATAAAT
TATAGTTTGATTTATTTAT
TAATGTTATTTGTAACACT
TAGTGTTACAAATAACATT
TAGTGATAATTCAATCATT
AAATGATTGAATTATCACT
TAATGATATTAATAAAATT
TACTGATGCATGTATCGGT
TACTGAGAATTTGATTGCT
CAGAGATACTTTTATCATT
TTCTGATTAATCTGTCGAT
TAGTGATTGCTTTCATGAT
TTTTGATAAGAATGACAAT
TATTGTCATTCTTATCAAA
TACTGACAAAAGCATCATT
AAATGATGCTTTTGTCAGT
AATTGATAGGTTGATCCTT
TCTTGATAGTTTTATAGGT
AATAGATTACTTAGTCACT
TATTAATAGATTACTTAGT
TATTGATAATTTTCATAGA
TATAGATACGTTTGTAAAT
TATTAATATATCTATAACT
TATAGATATATTAATAAGT
AAGTTATAGATATATTAAT
TATAGTTAATTAAATCAAT
AATTGATTTAATTAACTAT
TATTCATGCATTTGTAATT
TTTTGTTAATTTTATTAAC
TATTGTTAGTATTGTTTTT
TTTTAATGTCATTCTCATT
TACTGATAACTTGAACACC
TTTTCATTAATTTATCATC
TATTGAGCATTCTATAAAT
TATTATTAGTTATATTGTT
TACTAATACATTTATCAGA
TTCTGATAAATGTATTAGT
TATTGTTAAAATAATTATT
TTTTGATAGATAAGATTTT
TATTAATAATTTAGAAAGT
TATTGAGTAAATTGACACC
TTTTGATACCTTTATTGCC
TATCGATAAAATTGTCTGC
AATAGATATCGTTGACATT
ACGTGATAGAATTGTAAAT
AATTGATGATAAAATTGTC
TATTAACTTAATTGTAGAT
TATTGATGGTTATGTCTTT
TTCTGATACTTTGCTTAGT
TGTTGATATTTATAGCTTT
TATTGTTTGTTTTGTTTTC
AAGTGAGGTATTTATCAAT
TATTGATAAATACCTCACT
AAATGATCATTTTATAAAT
TTTTGTTATTTATATCATT
AGGTGATTATTTTGTTATT
TTTTAATATTCTTATCACT
TTTTGTTATTTTAAATTAT
ATTTGTGTTTTTTGTTATT
AACTTATATTTTTGTTATT
TAGTGATTACTTACTTATT
TACTGTTAGTTTGAACGTT
TATTTATCGATTTATCACT
TAGTGATAAATCGATAAAT
TGTTGATATGTCTGACACT
TATTAATAATTTCATCAGG
TCCTGACAACTTTGTCCTT
TACTGACAATTGACATATT
CCTTGATATTTTTGTCTAT
ATTAGATAAATTTGTTAAC
TATTATTAGATTAATAACT
AATTGATGGCTTAGTTATT

Quantitative data format: CSDeconv score

TTTTGATAAAAAAGTCAGT 52.401674
TACTGACTTTTTTATCAAA 52.401674
TATTGATTCATAAGTCAAT 9.562584
AATTGACTTATGAATCAAT 9.562584
TATTGTTTTTAATAACAAT 3.74506
TATTGTTATTAAAAACAAT 3.74506
TATTGATGTTTCTGTCCAA 5.461907
TATTGATAGCTCTAACTGT 74.577796
AATTGATAACTTTGTTTGT 1.553671
TAGTGATAATAGTCACACT 6.595708
AAGTGTGACTATTATCACT 6.595708
TGATGATTTATTTATCACT 4.144164
AAGTGATAAATAAATCATC 4.144164
TATTGATAACAATAAAACC 3.241545
TAATGATAATTTTCATGAT 13.861336
AATTATTCATTTTATCAAT 13.861336
AATTGATAAAATGAATAAT 13.861336
AATTAATAATTCTCATTGT 7.172115
TATTGATAATAATGTAATC 15.001788
TATTAATTATTTACACAAC 9.66826
TAGTGAGAATGTTCACAAT 3.836819
AATTGTGAACATTCTCACT 3.836819
AATTGTTTTTTTTGAAAGT 4.715154
TTTTGTTTTTTTTGTAATT 6.085729
AATTATTGTTTTTGAAAGT 6.085729
TATTGATAGGTTTAATAGT 22.707736
AATTGATAGGATTAACATC 6.241737
AATTGATAAGTCAATGATT 3.226487
TAATGATTTTTGTGTAAAT 12.236774
TATTTACACAAAAATCATT 12.236774
TATTGTGTCTTGTGTCACT 1.909505
ATTTAACAGTTTACTCATT 8.926114
AATTGTTATCATGATTATT 8.926114
TAGTGAGTGGTTTGTCATT 5.119038
TATTATCATTTTTGTAAAT 11.063284
TATTTACAAAAATGATAAT 11.063284
TATCGTTAGCTTTGTCATA 6.204446
TACTGATGGTTTTATTTCC 6.204446
TATTAACGATTTAGTTAGT 4.049207
TATTGATGTTGCCATCATT 8.530827
TATTGATGGAACTAATGAT 10.546001
AATTGATGTTTTTATTATG 1.986624
AATTCACAAAATTAACAAT 7.592559
AATTGTTAATTTTGTGAAT 7.592559
AATTGATGAATTTATTTAT 4.53096
AATTGTCCATATTGTCACT 4.53096
TATTGATAATTTACTAGAC 8.862383
TAGTGTTCATCTTGTCATT 2.898404
TATTAACTTTTTTGTCAGT 10.004579
TACTGACAAAAAAGTTAAT 10.004579
AATAGTCAGTGTTGTCATT 5.114108
TAGTGTGATATGTATCAAT 3.018231
TATTGATACATATCACACT 3.018231
TTTTTACATAATTATCATT 33.629479
TATTGACAGAAATATCACT 33.629479
CAGTGATATTTCTGTCAAT 33.629479
TATTGATAAGGTTATTTTC 3.836759
TATTGATAAGTTTATGAAT 3.452568
AATTCATAAACTTATCAAT 3.452568
AATTGATAACTTTGTAGGT 18.092185
AAGTGACAAAAAACTCATT 14.682468
TATTGATGATTATGTAATT 20.813042
AATTGTTAATTAAATAGAT 17.21981
TACTGATAAAAAAGAAATC 17.21981
AAATGATATATTTAACATT 17.21981
AAATGTTAAATATATCATT 17.21981
AATTGATGCTTTTGTATTT 6.330791
TATTGATAACTTTGTTCAA 6.36475
TATTGTCTAATTTATCGGT 14.528621
TACCGATAAATTAGACAAT 14.528621
TTTCGACGATTTTGTTAAT 6.882412
TATTGTTATTTCTGATGCT 5.937278
TACTGATAGTTTTGATTTC 10.978509
TATTGATATTTTTAACTTG 3.591587
TAGTGATAAAGTAGTCACT 5.574317
TAATGACAAGTTTAATATT 42.374629
TATTAATTTCGTTGTTATT 4.277676
TATTGATGAATTTATAGTT 4.539625
TATTGTCATTATTGGTGAT 6.317173
TACTACGAATATTGTCATT 6.317173
AATTAACAACTTTGATAGC 2.601637
AATTGAGTATTTTGTTGTG 4.951365
TATTAATTAAATGCTTAAT 9.354082
TCTTGTTAGTTTTGAAAGC 9.354082
TAATGTTAATTCTATAAGT 4.214361
TGTTGATTAAATTGTCAAA 3.714117
TAATTATATTTTTATAATT 33.952652
TAGTGACAATATAGTCATT 14.313026
AAATGACTATATTGTCACT 14.313026
TTTTAATATTTATGTCAGT 7.774662
TGCTGATTTTTTTGGCATT 7.774662
TATCGCTTTATATATTATT 7.774662
TATTTATTATTCTATTTCT 7.774662
TACTGATAACTTTAGTATT 7.350902
TATTATCAATTAAGTCATT 45.594012
TATTAACTTATTTATTTGT 5.271261
TACAAATAAATAAGTTAAT 5.271261
AACTGATGACTTTGTTCTT 5.062192
AAGTGTGACTTTTAACATT 2.649718
TATTGAGGATATTATCAGC 39.63345
AACTGATTTGATTGTTATT 9.287007
AATTAATAAAATGGTTAAC 6.028656
TATCGATAGGTTTATTTTT 5.478606
AATTGATATTCCAATTATT 4.127992
TTGTGACAGTTCTATCGTT 22.821098
TATTGATAATGTAAATTAT 3.12128
AATTATTGATAATGTAAAT 3.12128
TACTGTTGAATTTGTGAAC 4.102861
AATCAACAGAATTGTCATT 4.102861
TCTTGATCAATTAATCATT 2.569047
TATTAATAGTAAAGTCTAT 3.888999
TATAGACTTTACTATTAAT 3.888999
TATTGAGTCAATAAACAAT 16.258165
AATAGTTAGTTAAATCAGT 16.258165
TATTGACTCAATAGTTAGT 16.258165
AATTGCTATTAGTCTTATT 41.439547
TATTGTGTTGATTGATATT 9.724006
ATTTGAGATTGTTGTCATT 4.554886
AATTTATAAATCTATTTAT 28.233676
TATAGACCTTTTTAATAAT 28.233676
TATAAATAGATTTATAAAT 28.233676
TTTAGATAAATAACTAATT 2.745568
TATTGACAAAAAACACATC 7.996217
TTTTGTCAATATAATGAAT 7.996217
TATTATGGTTTTTGTTTTT 73.281686
TACTTTTAGAATTGTCAAT 46.985315
AATTGACAATTCTAAAAGT 46.985315
TGCTGACTATAAAGTCATT 10.8296
AACTGACATTTTTGTTTTC 13.437501
AATTGATGATGTTATTTAT 13.046937
TATTTATATTTATATCATT 13.046937
AAATGATATAAATATAAAT 13.046937
TATAGTTTGATTTATTTAT 5.059609
TAATGTTATTTGTAACACT 5.059609
TAGTGTTACAAATAACATT 5.059609
TAGTGATAATTCAATCATT 6.308505
AAATGATTGAATTATCACT 6.308505
TAATGATATTAATAAAATT 3.823176
TACTGATGCATGTATCGGT 5.771539
TACTGAGAATTTGATTGCT 4.519925
CAGAGATACTTTTATCATT 4.519925
TTCTGATTAATCTGTCGAT 47.565759
TAGTGATTGCTTTCATGAT 2.156113
TTTTGATAAGAATGACAAT 11.170617
TATTGTCATTCTTATCAAA 11.170617
TACTGACAAAAGCATCATT 9.717326
AAATGATGCTTTTGTCAGT 9.717326
AATTGATAGGTTGATCCTT 6.156938
TCTTGATAGTTTTATAGGT 12.147735
AATAGATTACTTAGTCACT 4.928334
TATTAATAGATTACTTAGT 4.928334
TATTGATAATTTTCATAGA 7.971876
TATAGATACGTTTGTAAAT 15.449873
TATTAATATATCTATAACT 16.5399
TATAGATATATTAATAAGT 16.5399
AAGTTATAGATATATTAAT 16.5399
TATAGTTAATTAAATCAAT 7.754186
AATTGATTTAATTAACTAT 7.754186
TATTCATGCATTTGTAATT 6.609415
TTTTGTTAATTTTATTAAC 2.84564
TATTGTTAGTATTGTTTTT 6.360275
TTTTAATGTCATTCTCATT 3.765786
TACTGATAACTTGAACACC 6.321272
TTTTCATTAATTTATCATC 20.713517
TATTGAGCATTCTATAAAT 20.713517
TATTATTAGTTATATTGTT 1.921344
TACTAATACATTTATCAGA 4.176612
TTCTGATAAATGTATTAGT 4.176612
TATTGTTAAAATAATTATT 2.137408
TTTTGATAGATAAGATTTT 2.137408
TATTAATAATTTAGAAAGT 29.062137
TATTGAGTAAATTGACACC 5.089283
TTTTGATACCTTTATTGCC 9.838965
TATCGATAAAATTGTCTGC 6.816061
AATAGATATCGTTGACATT 3.212534
ACGTGATAGAATTGTAAAT 29.944361
AATTGATGATAAAATTGTC 29.944361
TATTAACTTAATTGTAGAT 29.944361
TATTGATGGTTATGTCTTT 5.65041
TTCTGATACTTTGCTTAGT 8.039553
TGTTGATATTTATAGCTTT 18.017671
TATTGTTTGTTTTGTTTTC 2.129793
AAGTGAGGTATTTATCAAT 12.012498
TATTGATAAATACCTCACT 12.012498
AAATGATCATTTTATAAAT 3.328148
TTTTGTTATTTATATCATT 4.277025
AGGTGATTATTTTGTTATT 4.277025
TTTTAATATTCTTATCACT 4.277025
TTTTGTTATTTTAAATTAT 2.194839
ATTTGTGTTTTTTGTTATT 2.194839
AACTTATATTTTTGTTATT 6.778904
TAGTGATTACTTACTTATT 5.322572
TACTGTTAGTTTGAACGTT 5.135978
TATTTATCGATTTATCACT 10.64894
TAGTGATAAATCGATAAAT 10.64894
TGTTGATATGTCTGACACT 6.192545
TATTAATAATTTCATCAGG 26.6618
TCCTGACAACTTTGTCCTT 6.7156
TACTGACAATTGACATATT 1.666892
CCTTGATATTTTTGTCTAT 16.873997
ATTAGATAAATTTGTTAAC 16.873997
TATTATTAGATTAATAACT 7.771938
AATTGATGGCTTAGTTATT 7.771938

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TTTTGATAAAAAAGTCAGT
... ... VIBHAR_04788
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGACTTTTTTATCAAA
... ... VIBHAR_04788
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTCATAAGTCAAT
... ... VIBHAR_04791 VIBHAR_04792
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGACTTATGAATCAAT
... ... VIBHAR_04791 VIBHAR_04792
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTTTTAATAACAAT
... ... VIBHAR_04794 VIBHAR_04795 VIBHAR_04796 VIBHAR_04797
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTATTAAAAACAAT
... ... VIBHAR_04794 VIBHAR_04795 VIBHAR_04796 VIBHAR_04797
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGTTTCTGTCCAA
... ... VIBHAR_04797
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAGCTCTAACTGT
... ... VIBHAR_04807 VIBHAR_04806 VIBHAR_04808 VIBHAR_04809
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAACTTTGTTTGT
... ... VIBHAR_04809
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGATAATAGTCACACT
... ... VIBHAR_04815 VIBHAR_04814 VIBHAR_04816 VIBHAR_04817
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGTGACTATTATCACT
... ... VIBHAR_04815 VIBHAR_04814 VIBHAR_04816 VIBHAR_04817
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGATGATTTATTTATCACT
... ... VIBHAR_04846
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGATAAATAAATCATC
... ... VIBHAR_04846
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAACAATAAAACC
... ... malQ
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGATAATTTTCATGAT
... ... VIBHAR_04871 VIBHAR_04870 VIBHAR_04872 VIBHAR_04873
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTATTCATTTTATCAAT
... ... VIBHAR_04871 VIBHAR_04870 VIBHAR_04872 VIBHAR_04873
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAAAATGAATAAT
... ... VIBHAR_04871 VIBHAR_04870 VIBHAR_04872 VIBHAR_04873
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTAATAATTCTCATTGT
... ... VIBHAR_04898
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATAATGTAATC
... ... VIBHAR_04901
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATTATTTACACAAC
... ... VIBHAR_04904
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGAGAATGTTCACAAT
... ... VIBHAR_04905 VIBHAR_04904
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTGAACATTCTCACT
... ... VIBHAR_04905 VIBHAR_04904
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTTTTTTTGAAAGT
... ... VIBHAR_05020 VIBHAR_05021
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGTTTTTTTTGTAATT
... ... VIBHAR_05023 VIBHAR_05022
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTATTGTTTTTGAAAGT
... ... VIBHAR_05023 VIBHAR_05022
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAGGTTTAATAGT
... ... VIBHAR_05082
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAGGATTAACATC
... ... VIBHAR_05082
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAAGTCAATGATT
... ... VIBHAR_05085 VIBHAR_05084 VIBHAR_05086
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGATTTTTGTGTAAAT
... ... VIBHAR_05088 VIBHAR_05087 VIBHAR_05089
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTACACAAAAATCATT
... ... VIBHAR_05088 VIBHAR_05087 VIBHAR_05089
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTGTCTTGTGTCACT
... ... VIBHAR_05101 VIBHAR_05100 VIBHAR_05102
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
ATTTAACAGTTTACTCATT
... ... VIBHAR_05116 VIBHAR_05115
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTATCATGATTATT
... ... VIBHAR_05117 VIBHAR_05116 VIBHAR_05115
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGAGTGGTTTGTCATT
... ... VIBHAR_05123
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATCATTTTTGTAAAT
... ... VIBHAR_05136 VIBHAR_05137 VIBHAR_05138 VIBHAR_05139 VIBHAR_05140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTACAAAAATGATAAT
... ... VIBHAR_05136 VIBHAR_05137 VIBHAR_05138 VIBHAR_05139 VIBHAR_05140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGTTAGCTTTGTCATA
... ... VIBHAR_05162 VIBHAR_05163 VIBHAR_05164 VIBHAR_05165
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATGGTTTTATTTCC
... ... VIBHAR_05162 VIBHAR_05163 VIBHAR_05164 VIBHAR_05165
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACGATTTAGTTAGT
... ... VIBHAR_05162 VIBHAR_05163 VIBHAR_05164 VIBHAR_05165
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGTTGCCATCATT
... ... VIBHAR_05162 VIBHAR_05163 VIBHAR_05164 VIBHAR_05165
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGGAACTAATGAT
... ... VIBHAR_05162 VIBHAR_05163 VIBHAR_05164 VIBHAR_05165
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATGTTTTTATTATG
... ... VIBHAR_05166
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTCACAAAATTAACAAT
... ... VIBHAR_05169 VIBHAR_05170
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTAATTTTGTGAAT
... ... VIBHAR_05169 VIBHAR_05170
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATGAATTTATTTAT
... ... VIBHAR_05169 VIBHAR_05170
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTCCATATTGTCACT
... ... VIBHAR_05169 VIBHAR_05170
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATTTACTAGAC
... ... VIBHAR_05184 VIBHAR_05183 VIBHAR_05185
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGTTCATCTTGTCATT
... ... malG
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACTTTTTTGTCAGT
... ... VIBHAR_05222 VIBHAR_05221
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGACAAAAAAGTTAAT
... ... VIBHAR_05222 VIBHAR_05221
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATAGTCAGTGTTGTCATT
... ... VIBHAR_05227
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGTGATATGTATCAAT
... ... VIBHAR_05237 VIBHAR_05238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATACATATCACACT
... ... VIBHAR_05237 VIBHAR_05238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTTACATAATTATCATT
... ... VIBHAR_05237 VIBHAR_05238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACAGAAATATCACT
... ... VIBHAR_05237 VIBHAR_05238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
CAGTGATATTTCTGTCAAT
... ... VIBHAR_05237 VIBHAR_05238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAAGGTTATTTTC
... ... VIBHAR_05250 VIBHAR_05251
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAAGTTTATGAAT
... ... VIBHAR_05291
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTCATAAACTTATCAAT
... ... VIBHAR_05292 VIBHAR_05291
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAACTTTGTAGGT
... ... VIBHAR_05317 VIBHAR_05316 VIBHAR_05315 VIBHAR_05314 VIBHAR_05318
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGACAAAAAACTCATT
... ... codB VIBHAR_05319 VIBHAR_05321
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGATTATGTAATT
... ... VIBHAR_05364 VIBHAR_05363 VIBHAR_05365 VIBHAR_05366 VIBHAR_05367 VIBHAR_05368
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTAATTAAATAGAT
... ... VIBHAR_05364 VIBHAR_05363 VIBHAR_05365 VIBHAR_05366 VIBHAR_05367 VIBHAR_05368
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATAAAAAAGAAATC
... ... VIBHAR_05364 VIBHAR_05363 VIBHAR_05365 VIBHAR_05366 VIBHAR_05367 VIBHAR_05368
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAATGATATATTTAACATT
... ... VIBHAR_05364 VIBHAR_05363 VIBHAR_05365 VIBHAR_05366 VIBHAR_05367 VIBHAR_05368
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAATGTTAAATATATCATT
... ... VIBHAR_05364 VIBHAR_05363 VIBHAR_05365 VIBHAR_05366 VIBHAR_05367 VIBHAR_05368
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATGCTTTTGTATTT
... ... VIBHAR_05380 VIBHAR_05379 VIBHAR_05378 VIBHAR_05377 VIBHAR_05376 VIBHAR_05375 VIBHAR_05381
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAACTTTGTTCAA
... ... VIBHAR_05380 VIBHAR_05379 VIBHAR_05378 VIBHAR_05377 VIBHAR_05376 VIBHAR_05375 VIBHAR_05381
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTCTAATTTATCGGT
... ... VIBHAR_05386 VIBHAR_05385
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACCGATAAATTAGACAAT
... ... VIBHAR_05386 VIBHAR_05385
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTCGACGATTTTGTTAAT
... ... VIBHAR_05398 VIBHAR_05399 VIBHAR_05400 VIBHAR_05401 VIBHAR_05402 VIBHAR_05403 VIBHAR_05404
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTATTTCTGATGCT
... ... VIBHAR_05400 VIBHAR_05401 VIBHAR_05402 VIBHAR_05403 VIBHAR_05404
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATAGTTTTGATTTC
... ... VIBHAR_05473 VIBHAR_05472 VIBHAR_05474
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATTTTTAACTTG
... ... artP VIBHAR_05527 VIBHAR_05529 VIBHAR_05530 artM VIBHAR_05532
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGATAAAGTAGTCACT
... ... VIBHAR_05558 VIBHAR_05559
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACAAGTTTAATATT
... ... VIBHAR_05623 VIBHAR_05622 VIBHAR_05624
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATTTCGTTGTTATT
... ... VIBHAR_05645 VIBHAR_05646
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGAATTTATAGTT
... ... VIBHAR_05666 VIBHAR_05665
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTCATTATTGGTGAT
... ... VIBHAR_05693 VIBHAR_05692 VIBHAR_05694
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTACGAATATTGTCATT
... ... VIBHAR_05693 VIBHAR_05692 VIBHAR_05694
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTAACAACTTTGATAGC
... ... VIBHAR_05702 VIBHAR_05701 VIBHAR_05700
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGAGTATTTTGTTGTG
... ... VIBHAR_05702 VIBHAR_05701 VIBHAR_05700
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATTAAATGCTTAAT
... ... VIBHAR_05730 VIBHAR_05731 VIBHAR_05732
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TCTTGTTAGTTTTGAAAGC
... ... VIBHAR_05730 VIBHAR_05731 VIBHAR_05732
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGTTAATTCTATAAGT
... ... VIBHAR_05788 VIBHAR_05789
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGATTAAATTGTCAAA
... ... VIBHAR_05816 VIBHAR_05817 VIBHAR_05818 VIBHAR_05819
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATTATATTTTTATAATT
... ... VIBHAR_05843 VIBHAR_05842 VIBHAR_05841 VIBHAR_05840
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGACAATATAGTCATT
... ... VIBHAR_05843 VIBHAR_05842 VIBHAR_05841 VIBHAR_05840
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAATGACTATATTGTCACT
... ... VIBHAR_05843 VIBHAR_05842 VIBHAR_05841 VIBHAR_05840
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTAATATTTATGTCAGT
... ... VIBHAR_05855 VIBHAR_05854 VIBHAR_05853 VIBHAR_05852 VIBHAR_05851 VIBHAR_05856 VIBHAR_05857 VIBHAR_05858
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGCTGATTTTTTTGGCATT
... ... VIBHAR_05855 VIBHAR_05854 VIBHAR_05853 VIBHAR_05852 VIBHAR_05851 VIBHAR_05856 VIBHAR_05857 VIBHAR_05858
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGCTTTATATATTATT
... ... VIBHAR_05855 VIBHAR_05854 VIBHAR_05853 VIBHAR_05852 VIBHAR_05851 VIBHAR_05856 VIBHAR_05857 VIBHAR_05858
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTATTATTCTATTTCT
... ... VIBHAR_05855 VIBHAR_05854 VIBHAR_05853 VIBHAR_05852 VIBHAR_05851 VIBHAR_05856 VIBHAR_05857 VIBHAR_05858
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATAACTTTAGTATT
... ... VIBHAR_05880 VIBHAR_05879 VIBHAR_05878 VIBHAR_05881
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATCAATTAAGTCATT
... ... VIBHAR_05907 VIBHAR_05906
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACTTATTTATTTGT
... ... VIBHAR_05938 VIBHAR_05937
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACAAATAAATAAGTTAAT
... ... VIBHAR_05938 VIBHAR_05937
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTGATGACTTTGTTCTT
... ... VIBHAR_05963 VIBHAR_05962 VIBHAR_05961
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGTGACTTTTAACATT
... ... VIBHAR_05969 VIBHAR_05968
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGAGGATATTATCAGC
... ... VIBHAR_05988 VIBHAR_05989
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTGATTTGATTGTTATT
... ... VIBHAR_06006 fecB VIBHAR_06008 VIBHAR_06009 fecE VIBHAR_06011
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTAATAAAATGGTTAAC
... ... VIBHAR_06009 fecE VIBHAR_06011
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGATAGGTTTATTTTT
... ... VIBHAR_06034 VIBHAR_06033 VIBHAR_06032
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATATTCCAATTATT
... ... VIBHAR_06042 VIBHAR_06043 VIBHAR_06044
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTGTGACAGTTCTATCGTT
... ... VIBHAR_06093 VIBHAR_06094
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATGTAAATTAT
... ... VIBHAR_06111 VIBHAR_06110 VIBHAR_06109 VIBHAR_06108 VIBHAR_06107 VIBHAR_06106 VIBHAR_06105 VIBHAR_06104 atpC VIBHAR_06102 VIBHAR_06112 VIBHAR_06113 VIBHAR_06114 VIBHAR_06115 VIBHAR_06116 VIBHAR_06117 VIBHAR_06118
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTATTGATAATGTAAAT
... ... VIBHAR_06111 VIBHAR_06110 VIBHAR_06109 VIBHAR_06108 VIBHAR_06107 VIBHAR_06106 VIBHAR_06105 VIBHAR_06104 atpC VIBHAR_06102 VIBHAR_06112 VIBHAR_06113 VIBHAR_06114 VIBHAR_06115 VIBHAR_06116 VIBHAR_06117 VIBHAR_06118
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGTTGAATTTGTGAAC
... ... helD VIBHAR_06123 VIBHAR_06124 VIBHAR_06125 VIBHAR_06126 VIBHAR_06127
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATCAACAGAATTGTCATT
... ... helD VIBHAR_06123 VIBHAR_06124 VIBHAR_06125 VIBHAR_06126 VIBHAR_06127
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TCTTGATCAATTAATCATT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATAGTAAAGTCTAT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAGACTTTACTATTAAT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGAGTCAATAAACAAT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATAGTTAGTTAAATCAGT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACTCAATAGTTAGT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGCTATTAGTCTTATT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTGTTGATTGATATT
... ... VIBHAR_06128 VIBHAR_06129 VIBHAR_06130 VIBHAR_06131
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
ATTTGAGATTGTTGTCATT
... ... VIBHAR_06137
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTTATAAATCTATTTAT
... ... VIBHAR_06140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAGACCTTTTTAATAAT
... ... VIBHAR_06140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAAATAGATTTATAAAT
... ... VIBHAR_06140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTAGATAAATAACTAATT
... ... VIBHAR_06140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACAAAAAACACATC
... ... VIBHAR_06146 VIBHAR_06145 rbsC VIBHAR_06143 VIBHAR_06147
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGTCAATATAATGAAT
... ... VIBHAR_06146 VIBHAR_06145 rbsC VIBHAR_06143 VIBHAR_06147
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATGGTTTTTGTTTTT
... ... VIBHAR_06181 VIBHAR_06180 VIBHAR_06179 VIBHAR_06178 VIBHAR_06177 VIBHAR_06176 VIBHAR_06182 VIBHAR_06183
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTTTTAGAATTGTCAAT
... ... VIBHAR_06181 VIBHAR_06180 VIBHAR_06179 VIBHAR_06178 VIBHAR_06177 VIBHAR_06176 VIBHAR_06182 VIBHAR_06183
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGACAATTCTAAAAGT
... ... VIBHAR_06181 VIBHAR_06180 VIBHAR_06179 VIBHAR_06178 VIBHAR_06177 VIBHAR_06176 VIBHAR_06182 VIBHAR_06183
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGCTGACTATAAAGTCATT
... ... VIBHAR_06196 VIBHAR_06195 VIBHAR_06194 VIBHAR_06193 VIBHAR_06192 VIBHAR_06191 VIBHAR_06190 VIBHAR_06189 VIBHAR_06188 VIBHAR_06187 VIBHAR_06186 VIBHAR_06185
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTGACATTTTTGTTTTC
... ... fre VIBHAR_06238
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATGATGTTATTTAT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTATATTTATATCATT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAATGATATAAATATAAAT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAGTTTGATTTATTTAT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGTTATTTGTAACACT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGTTACAAATAACATT
... ... VIBHAR_06244 luxD VIBHAR_06242 VIBHAR_06241 VIBHAR_06240 fre VIBHAR_06238 VIBHAR_06245 VIBHAR_06246 VIBHAR_06247 VIBHAR_06248 VIBHAR_06249
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGATAATTCAATCATT
... ... VIBHAR_06252 VIBHAR_06253
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525)