Curation Information

Publication
Identification of CodY targets in Bacillus anthracis by genome-wide in vitro binding analysis.;Château A, van Schaik W, Joseph P, Handke LD, McBride SM, Smeets FM, Sonenshein AL, Fouet A;Journal of bacteriology 2013 Mar; 195(6):1204-13 [23292769]
TF
CodY [Q81WK7, view regulon]
Reported TF sp.
Bacillus subtilis subsp. subtilis str. SMY
Reported site sp.
Bacillus subtilis subsp. subtilis str. SMY
Created by
Elliot White
Curation notes
-
External databases
ArrayExpress (E-MEXP-1706) http://www.ebi.ac.uk/arrayexpress/arrays/E-MEXP-1706/.

Experimental Process

Experimenters ran 3 chip-seq experiments; sites that appeared in two of three were cross-referenced against a previously published micro-array to determine regulation. MEME was then used to establish an 11 bp motif

ChIP assay conditions
Growth of the cultures was followed by measuring the absorbance at 600 nm (A600). B. anthracis precultures were grown overnight at 37°C in BHI (brain heart infusion) (Difco) medium supplemented with 0.5% glycerol, with rotary shaking at 150 rpm. Experimental cultures were grown at 37°C under a 5% CO2 atmosphere in R medium (27) supplemented with 0.6% sodium bicarbonate (RBic) (2). RBic was inoculated from an overnight culture to a starting A600 of 0.05. Aeration of the culture was achieved by continuous stirring with a magnetic bar at 450 rpm. For DNA extraction, the culture was grown at 37°C in BHI until it reached mid-exponential phase (A600 = 0.8). The antibiotics used were spectinomycin (100 μg/ml) and kanamycin (40 μg/ml).
ChIP notes
Genomic DNA was extracted from B. anthracis RTC10 as described in reference 31. Four samples of 10 μg of DNA each were dissolved in 500 μl of sterile deionized water and sheared by sonication. The method used was initially developed by Majerczyk et al. (25) and improved by Dineen et al. (24). In brief, adapters were ligated to the ends of the sheared DNA fragments and DNA fragments of 300 to 500 bp were purified. Amplification of the fragments was performed by PCR using primers that were complementary to the adapter sequences. The DNA fragments were incubated with purified His6-tagged B. anthracis CodY (50 or 100 nM) in the presence of the coeffectors, 5 mM GTP and 10 mM each isoleucine, leucine, and valine. A negative control consisted of carrying out the same experiment using purified Bacillus subtilis His10-aconitase (32) in place of B. anthracis CodY. Purification of CodY that was bound to its target genes was performed on a Talon Co2+ metal affinity resin (Clontech). The DNA fragments that copurified with the His-tagged proteins were sequenced bidirectionally by the Tufts University Nucleic Acid and Protein Core Facility using an Illumina genome analyzer II.

Transcription Factor Binding Sites


TCAGAATATTC
TCAGAATATTC
TCAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAATATTC
ACAGAATATTC
ACAGAATATTC
ACAGAATATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAATATTC
TCGGAATATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAATATTC
ACTGAAAATTC
ACGGAAAATTC
ACAGAAATTTC
ACAGAATAATC
TCAGAAAATTG
ACAGAAAAATC
TCTGAATTTTC
TCAGAAAATTG
TCTGAATTTTC
TCAGAATATTT
TCAGAAAATTA
TCAGAAAATTA
TCAGAATATTT
TCAGAATATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTA
TCAGAATATTT
ACAGAAAATTG
TCAGAAGATTC
ACAGAATATTT
ACTGAAAAATC
ACAGAACATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
TCTGAATATTA
TCTGAATATTT
TCTGAATATTT
TCAGAAAATAC
ACTGAAAATTG
TCCGAATATTC
ACGGAATATTG
TCGAAATATTC
TCGAAATATTC
ACTGAATATTA
ACAGAAATATC
ACAGAAATATC
ATAGAAAATTC
ATAGAAAATTC
ACTGAAAATTT
ACTGAATATTA
ATAGAAAATTC
ATAGAAAATTC
ACTAAATATTC
ACTAAAAATTC
TTTGAATATTC
ACTGAAGATTC
TTTGAATATTC
ACGAAAAATTC
ACGAAATATTC
TCAGAAAAATT
TCAGAATAATT
TCAGAAAAATT
ACGGAATCTTC
TCAAAAAAATC
ATTGAAAATTC
ACTGAAATATC
TCAAAAAAATC
ACTGAAATATC
ACAAAATTTTC
TCTGATAATTC
TTAGAATTTTC
TTAGAATTTTC
TCTGAATTTTA
TCTGAATTTTA
TCTGAATTTTT
TCTGAATTTTT
ACAGAATAATT
TCTAAATTTTC
TTAGAAAAATC
TCAGAAGATTG
ACTGAATTTTA
ACTGAATTTTA
TAAGAATATTC
TCAGATTTTTC
ACTAAATTTTC
TTAGAAAATTG
TTTGAATTTTC
TTTGAATTTTC
TTAGAAAATTG
TTTGAATTTTC
ACAGAAGATTT
TTAGAATATTT
TTAGAATATTT
ACTGAATCATC
TTAAAATATTC
TTAAAATATTC
TCTGAAAAAAC
TCTAAAAATTA
TCAAAATTATC
TCTAAATCTTC
ACTAAAAATTT
TCGAAACATTC
TCGAAACATTC
TTTGAATATTT
TCAAATAATTC
TCAAATAATTC
TCTGAAAATAA
TCTGAAAATAA
TCTAAATTATC
TCTAAATTATC
TCTAAAAATAC
TCGGAATTATT
ATTGAAAATTA
ACAAAAAAATG
ACAAAAAAATG
ACAAAATTTTT
TAAGAAAAATC
TAAGAAAAATC
TCGAAATTTTG
TCTAAACTTTC
TCTAAACTTTC
TAAGAATATTA
TAAGAATATTA
ACAGAATTTAT
TCGCAACATTC
TTTGAAAAATG
TCGAAATAATA
TCAAAAAATAG
TCAAAAAATAG
ACGAAATAATA
TTAGAATAGTG
AATGAAAATTG
TCAAATAATTG
TCAAATAATTA
TCAAATAATTA
TCAAAAAACTT
ATAGAAATGTT
ATAGAAATGTT
ATTAAAAATAA
ATTAAAAATAA
TGAGAAATAAA
TCAGAATATTC
TCAGAATATTC
TCAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAATATTC
ACAGAATATTC
ACAGAATATTC
ACAGAATATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAAAATTC
ACAGAATATTC
TCGGAATATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAAAATTC
ACTGAATATTC
ACTGAAAATTC
ACGGAAAATTC
ACAGAAATTTC
ACAGAATAATC
TCAGAAAATTG
ACAGAAAAATC
TCTGAATTTTC
TCAGAAAATTG
TCTGAATTTTC
TCAGAATATTT
TCAGAAAATTA
TCAGAAAATTA
TCAGAATATTT
TCAGAATATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTT
TCAGAAAATTA
TCAGAATATTT
ACAGAAAATTG
TCAGAAGATTC
ACAGAATATTT
ACTGAAAAATC
ACAGAACATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
ACAAAATATTC
TCTGAATATTA
TCTGAATATTT
TCTGAATATTT
TCAGAAAATAC
ACTGAAAATTG
TCCGAATATTC
ACGGAATATTG
TCGAAATATTC
TCGAAATATTC
ACTGAATATTA
ACAGAAATATC
ACAGAAATATC
ATAGAAAATTC
ATAGAAAATTC
ACTGAAAATTT
ACTGAATATTA
ATAGAAAATTC
ATAGAAAATTC
ACTAAATATTC
ACTAAAAATTC
TTTGAATATTC
ACTGAAGATTC
TTTGAATATTC
ACGAAAAATTC
ACGAAATATTC
TCAGAAAAATT
TCAGAATAATT
TCAGAAAAATT
ACGGAATCTTC
TCAAAAAAATC
ATTGAAAATTC
ACTGAAATATC
TCAAAAAAATC
ACTGAAATATC
ACAAAATTTTC
TCTGATAATTC
TTAGAATTTTC
TTAGAATTTTC
TCTGAATTTTA
TCTGAATTTTA
TCTGAATTTTT
TCTGAATTTTT
ACAGAATAATT
TCTAAATTTTC
TTAGAAAAATC
TCAGAAGATTG
ACTGAATTTTA
ACTGAATTTTA
TAAGAATATTC
TCAGATTTTTC
ACTAAATTTTC
TTAGAAAATTG
TTTGAATTTTC
TTTGAATTTTC
TTAGAAAATTG
TTTGAATTTTC
ACAGAAGATTT
TTAGAATATTT
TTAGAATATTT
ACTGAATCATC
TTAAAATATTC
TTAAAATATTC
TCTGAAAAAAC
TCTAAAAATTA
TCAAAATTATC
TCTAAATCTTC
ACTAAAAATTT
TCGAAACATTC
TCGAAACATTC
TTTGAATATTT
TCAAATAATTC
TCAAATAATTC
TCTGAAAATAA
TCTGAAAATAA
TCTAAATTATC
TCTAAATTATC
TCTAAAAATAC
TCGGAATTATT
ATTGAAAATTA
ACAAAAAAATG
ACAAAAAAATG
ACAAAATTTTT
TAAGAAAAATC
TAAGAAAAATC
TCGAAATTTTG
TCTAAACTTTC
TCTAAACTTTC
TAAGAATATTA
TAAGAATATTA
ACAGAATTTAT
TCGCAACATTC
TTTGAAAAATG
TCGAAATAATA
TCAAAAAATAG
TCAAAAAATAG
ACGAAATAATA
TTAGAATAGTG
AATGAAAATTG
TCAAATAATTG
TCAAATAATTA
TCAAATAATTA
TCAAAAAACTT
ATAGAAATGTT
ATAGAAATGTT
ATTAAAAATAA
ATTAAAAATAA
TGAGAAATAAA

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TCAGAATATTC
... ... BAS2346 BAS2345 BAS2347
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATATTC
... ... BAS2346 BAS2345 BAS2347
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTC
... ... hslO BAS0065 BAS0067
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS4912 BAS4911 BAS4913
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS4912 BAS4911 BAS4913
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS4778 BAS4777 BAS4779 BAS4780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTC
... ... BAS3131 BAS3132 BAS3133 BAS3134
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTC
... ... BAS2638 BAS2639 BAS2640 BAS2641 BAS2642 BAS2643 BAS2644
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTC
... ... BAS2536 BAS2538 BAS2539 BAS2540 BAS2541
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTC
... ... BAS2251 BAS2250 BAS2252 BAS2253 BAS2254
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS2138 BAS2137 BAS2139 BAS2140 BAS2141 BAS2142 BAS2143 BAS2144
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS2138 BAS2137 BAS2139 BAS2140 BAS2141 BAS2142 BAS2143 BAS2144
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS2064 BAS2065 BAS2066 BAS2067 BAS2068 BAS2069 BAS2070 BAS2072
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS1792 BAS1793 BAS1794 BAS1795 BAS1796 BAS1797 BAS1798 BAS1799 BAS1800 BAS1801 BAS1802
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS1683 BAS1684 BAS1685 BAS1686
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS0951 BAS0950 BAS0952
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS4778 BAS4777 BAS4779 BAS4780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTC
... ... BAS4543 BAS4542 BAS4541 BAS4544 BAS4545 BAS4546
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTC
... ... BAS1712 BAS1711 BAS1713 BAS1714 BAS1715 BAS1716 BAS1717 BAS1718
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCGGAATATTC
... ... BAS3855 BAS3854 BAS3853 BAS3852 BAS3856 BAS3857
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTC
... ... BAS3347 panF BAS3345 BAS3344 BAS3343 BAS3342 BAS3341 BAS3340 BAS3339 BAS3338 BAS3337 BAS3336 BAS3335 BAS3334 BAS3348 fabG BAS3350 BAS3351 BAS3352 BAS3353 BAS3354
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTC
... ... BAS3271 BAS3270 BAS3272 BAS3273
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTC
... ... BAS3271 BAS3270 BAS3272 BAS3273
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTC
... ... BAS3252 BAS3251 BAS3250 BAS3249 BAS3248 BAS3247 BAS3246 BAS3245 BAS3253
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAATATTC
... ... BAS3228 BAS3227 BAS3230 BAS3231
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTC
... ... BAS3347 panF BAS3345 BAS3344 BAS3343 BAS3342 BAS3341 BAS3340 BAS3339 BAS3338 BAS3337 BAS3336 BAS3335 BAS3334 BAS3348 fabG BAS3350 BAS3351 BAS3352 BAS3353 BAS3354
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACGGAAAATTC
... ... BAS0166 BAS0167 BAS0168 BAS0169
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAATTTC
... ... BAS0538 BAS0537 BAS0536 BAS0535 BAS0534 BAS0539 BAS0540 BAS0541
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATAATC
... ... BAS4014 BAS4013 BAS4012 BAS4011 BAS4010 BAS4009 BAS4015 BAS4017 BAS4016
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTG
... ... BAS3871 BAS3870 BAS3869 BAS3868 BAS3872 BAS3873
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAAATC
... ... BAS1600 BAS1599 BAS1598 BAS1597 flgG BAS1595 flhA flhB fliR fliQ fliP BAS1588 BAS1587 BAS1585 BAS1584 BAS1583 BAS1601 BAS1602
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATTTTC
... ... BAS0671 BAS0670 BAS0672 BAS0673 BAS0674 BAS0675 BAS0676 BAS0677
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTG
... ... BAS3871 BAS3870 BAS3869 BAS3868 BAS3872 BAS3873
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATTTTC
... ... BAS1254 BAS1255
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATATTT
... ... BAS4445 BAS4446
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTA
... ... BAS4390 BAS4389 BAS4388 BAS4387 BAS4386 BAS4391 BAS4392 BAS4393 BAS4394 BAS4395
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTA
... ... BAS4390 BAS4389 BAS4388 BAS4387 BAS4386 BAS4391 BAS4392 BAS4393 BAS4394 BAS4395
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATATTT
... ... BAS3570 BAS3569 BAS3571
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATATTT
... ... BAS3570 BAS3569 BAS3571
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTT
... ... BAS2802 BAS2801 BAS2803 BAS2804 BAS2806 BAS2807
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTT
... ... BAS2802 BAS2801 BAS2803 BAS2804 BAS2806 BAS2807
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTT
... ... BAS2574 BAS2573 BAS2572 BAS2575 BAS2576 BAS2577 BAS2578
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTT
... ... BAS5269 BAS5268 BAS5267 BAS5266 BAS5264 BAS5263 BAS5270
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTT
... ... BAS4512 BAS4511 BAS4510 BAS4509 BAS4508 BAS4507 BAS4506 BAS4513 BAS4514 BAS4515 BAS4516 BAS4518 BAS4519 BAS4520 BAS4521
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATTA
... ... BAS3072 BAS3071 BAS3070 BAS3069 BAS3073
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATATTT
... ... BAS0840 BAS0839 BAS0841
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAAATTG
... ... BAS0921 BAS0922 BAS0923 BAS0924
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAGATTC
... ... BAS0325 BAS0324 BAS0323 BAS0326
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAATATTT
... ... BAS2893 BAS2892 BAS2894 BAS2895
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAAATC
... ... BAS1872 BAS1871 BAS1873 BAS1874 BAS1875
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAACATTC
... ... BAS2880 BAS2879 BAS2878 BAS2876 BAS2881 BAS2882 BAS2883
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATATTC
... ... BAS1300 BAS1301 BAS1302
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATATTC
... ... BAS1300 BAS1301 BAS1302
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATATTC
... ... BAS0779 BAS0780 BAS0781 BAS0782
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATATTC
... ... BAS0669 BAS0668 BAS0667 BAS0666 BAS0670 BAS0671 BAS0672 BAS0673 BAS0674 BAS0675 BAS0676 BAS0677
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATATTC
... ... BAS0779 BAS0780 BAS0781 BAS0782
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATATTA
... ... BAS5115 fabZ
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATATTT
... ... BAS3435 BAS3436 BAS3437
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATATTT
... ... BAS1337 BAS1336 BAS1335 BAS1334 BAS1333 BAS1332 sat BAS1330 BAS1338
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAATAC
... ... BAS3421 BAS3420 BAS3419 BAS3418 BAS3417 BAS3416 BAS3415 BAS3414 BAS3413 BAS3412 BAS3422
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTG
... ... BAS0228 BAS0227 BAS0226 BAS0229
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCCGAATATTC
... ... BAS4840 BAS4839 BAS4837 BAS4838 BAS4835 BAS4836 BAS4834 BAS4833 BAS4832 BAS4841 BAS4842 BAS4843 BAS4844
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACGGAATATTG
... ... BAS3529 BAS3528 BAS3530
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCGAAATATTC
... ... BAS3425 BAS3426 BAS3427 BAS3428 BAS3429 BAS3430 BAS3431
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCGAAATATTC
... ... BAS3425 BAS3426 BAS3427 BAS3428 BAS3429 BAS3430 BAS3431
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAATATTA
... ... BAS2060 BAS2061 BAS2062 BAS2063
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAATATC
... ... BAS1002 BAS1001 hemH hemE BAS1003
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAGAAATATC
... ... BAS1002 BAS1001 hemH hemE BAS1003
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ATAGAAAATTC
... ... BAS0911 BAS0912
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ATAGAAAATTC
... ... BAS0911 BAS0912
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAAATTT
... ... BAS0196 BAS0197 BAS0198
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAATATTA
... ... BAS3894 BAS3895
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ATAGAAAATTC
... ... BAS3037 BAS3036 BAS3035 BAS3034 BAS3038
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ATAGAAAATTC
... ... BAS3037 BAS3036 BAS3035 BAS3034 BAS3038
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTAAATATTC
... ... BAS1003 BAS1004 BAS1005
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTAAAAATTC
... ... BAS0566 BAS0567 BAS0568
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TTTGAATATTC
... ... BAS3307 BAS3308 BAS3309 BAS3310 BAS3311 BAS3312 BAS3313 BAS3314 BAS3315
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAGATTC
... ... BAS2285 BAS2284 BAS2283 BAS2286
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TTTGAATATTC
... ... BAS1673 BAS1672 BAS1674
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACGAAAAATTC
... ... BAS4884 BAS4883 BAS4885 BAS4886
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACGAAATATTC
... ... BAS1280 BAS1279 BAS1278 BAS1277 BAS1276 BAS1281 BAS1282 BAS1283 BAS1284 BAS1285 BAS1286 BAS1287 BAS1288
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAAATT
... ... BAS3900 BAS3901 BAS3902
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAATAATT
... ... BAS1148 BAS1147 BAS1146 BAS1145 BAS1150
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAGAAAAATT
... ... BAS3900 BAS3901 BAS3902
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACGGAATCTTC
... ... BAS1718 BAS1717 BAS1716 BAS1715 BAS1714 BAS1713 BAS1719
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAAAAAAATC
... ... BAS5077 BAS5078 BAS5079 BAS5080
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ATTGAAAATTC
... ... BAS4831 BAS4830 BAS4829 BAS4828 BAS4827 BAS4832 BAS4833 BAS4834 BAS4836 BAS4835 BAS4838 BAS4837 BAS4839 BAS4840
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAATATC
... ... BAS2567 BAS2566 BAS2565 BAS2564 BAS2563 BAS2562 BAS2561 BAS2560 BAS2559 BAS2558 BAS2557 BAS2556 BAS2555 BAS2568 BAS2569 BAS2570 BAS2571
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCAAAAAAATC
... ... BAS5077 BAS5078 BAS5079 BAS5080
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACTGAAATATC
... ... BAS2567 BAS2566 BAS2565 BAS2564 BAS2563 BAS2562 BAS2561 BAS2560 BAS2559 BAS2558 BAS2557 BAS2556 BAS2555 BAS2568 BAS2569 BAS2570 BAS2571
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
ACAAAATTTTC
... ... BAS1635 BAS1634 BAS1632 BAS1636
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGATAATTC
... ... BAS0841 BAS0842 BAS0843 BAS0844
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TTAGAATTTTC
... ... BAS3414 BAS3413 BAS3412 BAS3415 BAS3416 BAS3417 BAS3418 BAS3419 BAS3420 BAS3421
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TTAGAATTTTC
... ... BAS3414 BAS3413 BAS3412 BAS3415 BAS3416 BAS3417 BAS3418 BAS3419 BAS3420 BAS3421
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATTTTA
... ... BAS1787 BAS1786 BAS1785 BAS1788 BAS1789 BAS1790 BAS1791
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATTTTA
... ... BAS1787 BAS1786 BAS1785 BAS1788 BAS1789 BAS1790 BAS1791
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - not specified not specified
TCTGAATTTTT
... ...