Curation Information

Publication
Identification of AlgR-regulated genes in Pseudomonas aeruginosa by use of microarray analysis.;Lizewski SE, Schurr JR, Jackson DW, Frisk A, Carterson AJ, Schurr MJ;Journal of bacteriology 2004 Sep; 186(17):5672-84 [15317771]
TF
AlgR [P26275, view regulon]
Reported TF sp.
Pseudomonas aeruginosa PAO1
Reported site sp.
Pseudomonas aeruginosa PAO1
Created by
Erill Lab
Curation notes
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Experimental Process

Differentially expressed genes identified by DNA-array. Putative sites identified by MSA with known (algD) promoter sites.

Transcription Factor Binding Sites


CCGTTCGTC
CCGTTGTTC
CCGTGCGTC
CCGTTCGTC
CCGTTGTTC
CCGTGCGTC

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
CCGTTCGTC ibpA,
... ... ibpA PA3125 PA3124 PA3123 PA3122 PA3127 PA3128 PA3129 PA3130 PA3131 PA3132 PA3133
Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - repressor dimer
CCGTTGTTC lon,
... ... lon clpX clpP tig hupB PA1804.1 ppiD fabI PA1807 PA1808 PA1809 PA1810 PA1811
Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - repressor dimer
CCGTGCGTC hslV,
... ... hslV PA5052 argS hslU PA5055
Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - repressor dimer