Curation Information

Publication
Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000.;Butcher BG, Bronstein PA, Myers CR, Stodghill PV, Bolton JJ, Markel EJ, Filiatrault MJ, Swingle B, Gaballa A, Helmann JD, Schneider DJ, Cartinhour SW;Journal of bacteriology 2011 Sep; 193(18):4598-611 [21784947]
TF
Fur [Q87WN7, view regulon]
Reported TF sp.
Pseudomonas syringae pv. tomato str. DC3000
Reported site sp.
Pseudomonas syringae pv. tomato str. DC3000
Created by
Elliot White
Curation notes
-
External databases
NCBI GEO (GES13500) http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GES13500.

Experimental Process

Researchers used ChIP-seq to identify areas of the genome where Fur bound, and then ran a motif discovery algorithm (MEME) to locate binding sites within the fur-bound regions.

ChIP assay conditions
BBPS30#1, BBPS30#2, and BBPS31 along with three independent wild-type (WT) DC3000 cultures were prepared using a Sixfors bioreactor system as described previously (3). Briefly, strains were grown in 400 ml mannitol-glutamate (MG) medium (10 g/liter mannitol, 2 g/liter l-glutamic acid, 0.5 g/liter KH2PO4, 0.2 g/liter NaCl, 0.2 g/liter MgSO4, final pH of 7). Cultures were adjusted to 50 μM iron citrate (+ Iron) or 50 μM Na citrate (− Iron) at an optical density at 600 nm (OD600) of 0.35 to 0.4 and
ChIP notes
The 100-ml samples removed from the bioreactor after exposure for 30 min to iron citrate or sodium citrate were treated with 1% formaldehyde at room temperature (RT) with gentle shaking for 20 min. Cross-linking was quenched by the addition of 0.36 M glycine, followed by incubation at RT with gentle agitation for 5 min. The cells were harvested by centrifugation at 5,000 × g, and the pellet washed twice with an equal volume of ice-cold Tris-buffered saline buffer (TBS; 10 mM Tris HCl [pH 7.4], 150 mM NaCl, and 2.7 mM KCl). The cell pellet was stored at −80°C until required. Cells were lysed by incubation at 37°C for 10 min in 1 ml CelLytic B lysis reagent (Sigma), 10 μl Longlife lysozyme (G-Biosciences), and 1 mM phenylmethylsulfonyl fluoride (PMSF) followed by sonication six times for 30 s at 15% power (using a Fisher Scientific 550 sonic dismembrator with a microtip). This had previously been determined to shear the DNA to an average size of approximately 400 bp. Insoluble material was removed by centrifugation at 16,000 × g for 10 min at 4°C. One hundred microliters of the supernatant was retained as the lysate control. The remaining supernatant was applied to 40 μl of anti-FLAG M2 affinity gel (Sigma), which had been washed twice with TBS as described by the manufacturer. The supernatant-anti-FLAG suspension was incubated at 4°C for 2 h with gentle agitation. The resin was collected by centrifugation at 5,000 × g for 30 s at 4°C and the supernatant carefully removed and discarded. The resin was resuspended in 500 μl of ice-cold TBS, transferred to a Spin-X centrifuge tube filter (Sigma), and collected by centrifugation at 3,000 × g for 30 s. The resin was then washed two times with ice-cold TBS. The bound material was eluted from the resin by incubation with 100 μl TBS containing 300 ng/μl FLAG peptide (Sigma) for 30 min at 4°C with gentle agitation. The Spin-X column was transferred to a new tube and the elutant (IP sample) collected by centrifugation at 5,000

Transcription Factor Binding Sites


TTGATAGTGATTCTCAT
ATGAGAATTAATCTCAA
ATGATATTCATTATCAA
ATGAGAATGCTTGTCAA
ATCATAACGATTCTCAT
ATGCAAATGGTTCGCGA
TTGAAAGTCATTCTCGA
TCGGTAATGGTTCTCAA
CTGAGAATGGTTTGCGT
ATGCAAATCTTTCGCAT
ATGAAGATCATTCTCGA
GCGAGATTGATTTTCAA
CTGGGAATGCTTATCAT
TCGCGACTCATTGTCAT
TTGATAACTGTTCTCAT
ACGATATTGATTGTCGT
ATGGGAATGCCTCTCGT
ATACAACTGATTCTCAT
GCGAGAACTATTCTCAC
TTGATATCGATTTTCAA
ACGGGAATGTTTCGCGA
TTGCAAAAGGTTCTCAA
TTGATTATCGTTCCCAA
GTGGCATTGATTCTCAA
ACATGAATGATTTTCAT
TTGAGGAGCATTATCAA
GTGCGAATGTTTCCCAC
ATGATAATTGATATCAT
ATGAGAATTGCTATCGT
ACGGCAATGTTTCGCAT
CTGATTATCGTTCCCAT
TTGAGATTGTTTTGCAA
CCGAGAGCCATTCGCGA
TCGCAAATGTTTTTCAA
GCGAGAGCGATTCGCAG
ATGACCATCATTATCGT
ATCAGAGTGATTCGCGC
TCGACAAGGGTTTTCAT
CTGCAATCGATTCGCAA
TTGATGACGATTCGCAG
ATCCGTTTCATTCTCAT
GCGCAGATCATTATCAT
ACAGAAATAATTCTCAA
ATACGTATCATTCCCAC
ACGAGATTGCTTCACGT
TTGCGGACCGTTCCCAT
CTGCCATTGATTCTCGG
TCCGGAATGATTCGCGG
ATGGGACTGAATAGCGA
TTGGGTCTGATTTTCGT
TCGCGAATTGATCTCGA
CTGAAAGTCATTTGCAC
GTGGCATCGATTCTCAA
TCGCGAATGTTTATTAA
ATAAGAGGGATTATCGT
ATTCAAATGATTCGCAA
ATAAGAACTATTATCGC
TCAAGAACCCTTATCGT
TCGCAACTCCTTCTCGA
AAGAAAGTCATTATCGT
AAGAGGATGGTTATCAT
ACCGGAATTATTTTCAA
AGCAGAATGATTTTCAG
ATCGAACTCATTCTCGA
ATGTGGATGATTACCGT
GTGATAAAGTTTCTCAG
TTGCGTTCGGTTCGCAT
TCAGGAATACTTCTCAT
CCGAGTTTCGTTCGCGT
ATGATCATGTTTCTCAG
ACGGTTACGATTATCAG
TTGCGCATGATTCGTGT
AAGAGAATCGTATGCAT
ACGATAGTGTTTTTCAG
TTGCGACGGGATCTCGT
GTGAGTGTCACTATCAT
ATAAAAATGTATTTCAT
GCGCGAGTAGTTATCAT
TCGCGAATGTCTTTCAC
ATGCAGATGAGTAGCAA
CTGCAAACCCATCTCGT
TTGAGGCCCATTTGCAA
CTGATTATCGTTCCCGC
ACAAAAATCCATCTCGA
CTGGGAATTGTTGTCAG
GTGCGCAGCATTCTCGA
ATCTGACTGATTATCGT
TTGCAAAGTCTTCTCGT
GCAGAAACGATTTTCAT
ATCGAAATGATTGGCGA
ATGAAAGCCTTTCTCGG
CTGCAACTGATTCTGGA
GCGAGACTGTTTCTTGT
GTGCCATCGATTCTTAT
ATGAGGATGCTCATCAA
AGCAGAATGACTCGCAA
TTGTGGTTGATTCGCGT
TCATCAATGATTCGCAA
ACCAGTATCATTCGTGT
ACCGAAATGACTCGCAA
ATGAGGTTGTTTACCAT
GGGCGAACAGTTCTCAT
TTCGTAATCATTTGCGG
ACGGGAGCGTTTATCGT
ATCGTACTGTTTCTCAT
CTGTTCATCATTCTCAA
GTGCCAATGCTCCGCAT
ATGCGGCTGCTTTGCAT
GCTGTAATCATTCTCAA
TTGCGCATGATAATCGA
AGGCGGCTGATTATCAT
GTGATTTGCATTTTCAT
ACAGGACTGATATTCAT
CTGGTAAAGTTTCTCGA
ATAGTTACGATTATCGT
GAGAAAATCACTCCCAA
ATAAGGCGCATTCGCAT
GGGGGAATTATTATCAG
CTGGTTGCGATTCTCAA
ATGAGCCTCATTCGCTT
CCAAGAAGGTTTCGCAA
GAAAGAATGATTGTCAC
GTGGGAGCGATAATCGT
GCGACATTGAATTGCAA
ACGATGATTGATCTCAA
TCGTTCATCATTTTCAT
ATAAGAGCGATTATTGA
CCGCTGGTGATTTTCAT
AGACCAATGCTTCTCAT
CTGCATATCGATATCAA
TCGTTAATCGCTTTCGT
GCGGCAATGATAGGCAT
TTAGCAATGGTTATCGG
AGGCGACTGAAACTCAA
ATAGTTCTGATTATCGT
CTAGGTATGAGTCGCGT
CTAGGTATGAGTCGCGT
ATCATGATGCTTGTCAT
AAGCAATTGATATTCAT
GCCGAACTGATTATCAA
ATACTTATGCATCTCAA
TTGGTATCTACTCGCAT
ATGTAACGCATTCTGAT
GCGAGGATGAATGTTAT
ACATCAATGACTATCAT
ATGCAAGCTGCTCTCAT
ACAATATTCGTTCTGGA
TCAAGAATTGCTCGCAG
TTGAGGAGTATTCGTGT
GGGGGAATGATACTCCT
ATGATCAGCATTCTGAC
GCAAAACTGCTTATCGT
CTGCAACTGCGTTTCAA
CTGGAACGTATTCTCAC
ATAGAAATTGTTTTCGC
TCGGTGTTGACTCGCAT
ATGTGAACTTTTCTTAA
GGAAGAATGATTTTTGA
CTGCATCTCGTTATCAG
ATGATTGCGGATCTCAG
ATGCATTCGGTTTGCGT
GCGCAAGTACTTCGCAA
ATGCTCTTAAATCTCAT
ATTGGAACAGTTCTCGT
AGCAAAACCATTTCCAA
GTGGCGATGATTTGCGG
GCCTCAATGATTCTCGG
ATGCCTCCCGTTTTCGT
GTGATTCTCATTGTTGT
TGGTGACTAATTTTCAT
AAGCCAATCACTCTGAA
TGCAGAACGGCTCTCAA
GCGCGGCGCATTCGCAG
ACGGGGATCGTTACGAA
TCATCAACGATTATCAG
ACGTCAACCGTTTGCGC
CTGAAAGATGTTCTCAC
GCTGGAATCATTCTTAG
ATGGCCTTTATTCGCAT
ACAGGTTTCACTCGCAA
GTAGGAATATTTTGCGT
CACTGAATGATTTTCAA
ATGTTATTGCTCCGCGT
CTGCCTGTGATTATTAT
AAAAGACTCAATGTCGT
TTGGATCTGATAACCAT
ATAGTACAGATTCGTAT
GCGGTATTGAGAATCGT
TTGAAGGTGAATTGCAG
GTAACAATGAGAAGCAA
CCCGGGACGGTTCTCGT
TTGCGCATGCGTATCGC
AATACAATCGTTCTCGT
ATCGCAATGGGTATCGC
ATGGTTGAGGTTATCGT
ACGCAACGTGTTCCCGA
TTGAAATGGTTTCGTAC
TTGAGTTTTGATCGCGC
ATGCGTCCGCTTCGCTT
GTGCTTTAGGTTATCAA
GTGATATTTGTTTACGA
CTGCAGATGAATATTGA
ATGACTCTTATTCTTGG
TCTAGAATGCATCCCAC
ATGGACACGATTATCTA
ATGACTTCATTTCGCAT
TTGGCGATAATAATCGT
ATGACTTTTATTCGCTA
TGCACATTGTTTCTCAT
TGGTGAATGGTAAGCGA
TTACGATGCTTACTCGT
GTCGCATTGTTTCGCAA
GTACCTTTCATTTGCAA
GTCCAAATGATAACTAT
CAGACTACCATTCTGAT
CTCATCACCATTGTCGT
GAGTGAAACGTTCTCGG
CCGTGATTTTGTCTCAT
CCGCAAGCGCTCCTCGT
ATGAGTCCTTTTAGCAG
GAGATTCTCAATCGCGT
TAGAGAAGCCTTTCTAA
TGCTGAATCATAAGCAT
CTGCAACTGCGTTACAT
CCGTGACTGAGTGGCGC
ACGGTATTGCGAATCAC
TTCGGTTTCATCTTCAA
CTGACTTTCAGTTGCGC
AGGCAAATAGAAATCAT
ATGAATATTTTTCCGAG
AGCAGAACGAGTATTGA
GTACCAGTTAATCGCAA
GCATAAATGTTTCTTGT
GTTGCAGCCATTCTCAA
TGCGAAACGATTCTTGA
TTCTTTCTGATTCTTAT
AGCAGAATGCGTTCCAC
GTGCGTCGTATTCTTGA
CCGCTGTTGTTTCTGAT
CTTGAAACGTTTCTCGA
ATACGTCATATTCGCAG
TCAGCAACCCCTATCGT
AAACGAAGCATTCCTGG
ACTACACCGAATCGCAA
ACGTAATTGATAACTGT
TGATGAATGATTTGTAC
GTCCGACGCCGTTTCAT
AAGATGTTGCATCTCAC
AGCGGCTTCGTTCTCAT
TGATGAGCGATTATCAC
AGCGTATCGCTTATCAT
TTGTCAGCAACTCGCGT
GACGAAATTGTTCTCAG
GGAGTAATTATTATTAA
TCGGCGCTGTTTATCGC
ACGCTGTACTTTTGCGT
CTGTTTCTGTTTAGCGA
CCGTAATTCGCACTCAC
AAGCTCCTGATTATTGT
TGGCCATCGCATCGCGA
CGAGGAACGCTTTACAT
TCGAAGGTGTGTTGCAG
TGCGCAGTGATCCGCAT
GAAGGAATACTTCTTAG
GTCATCATCGCAATCAT
ATCGGCAATATCCTCAA
TCTGGCATCGCTCTCGA
GAAAGACGCAACCGCAG
TTGATAGTGATTCTCAT
ATGAGAATTAATCTCAA
ATGATATTCATTATCAA
ATGAGAATGCTTGTCAA
ATCATAACGATTCTCAT
ATGCAAATGGTTCGCGA
TTGAAAGTCATTCTCGA
TCGGTAATGGTTCTCAA
CTGAGAATGGTTTGCGT
ATGCAAATCTTTCGCAT
ATGAAGATCATTCTCGA
GCGAGATTGATTTTCAA
CTGGGAATGCTTATCAT
TCGCGACTCATTGTCAT
TTGATAACTGTTCTCAT
ACGATATTGATTGTCGT
ATGGGAATGCCTCTCGT
ATACAACTGATTCTCAT
GCGAGAACTATTCTCAC
TTGATATCGATTTTCAA
ACGGGAATGTTTCGCGA
TTGCAAAAGGTTCTCAA
TTGATTATCGTTCCCAA
GTGGCATTGATTCTCAA
ACATGAATGATTTTCAT
TTGAGGAGCATTATCAA
GTGCGAATGTTTCCCAC
ATGATAATTGATATCAT
ATGAGAATTGCTATCGT
ACGGCAATGTTTCGCAT
CTGATTATCGTTCCCAT
TTGAGATTGTTTTGCAA
CCGAGAGCCATTCGCGA
TCGCAAATGTTTTTCAA
GCGAGAGCGATTCGCAG
ATGACCATCATTATCGT
ATCAGAGTGATTCGCGC
TCGACAAGGGTTTTCAT
CTGCAATCGATTCGCAA
TTGATGACGATTCGCAG
ATCCGTTTCATTCTCAT
GCGCAGATCATTATCAT
ACAGAAATAATTCTCAA
ATACGTATCATTCCCAC
ACGAGATTGCTTCACGT
TTGCGGACCGTTCCCAT
CTGCCATTGATTCTCGG
TCCGGAATGATTCGCGG
ATGGGACTGAATAGCGA
TTGGGTCTGATTTTCGT
TCGCGAATTGATCTCGA
CTGAAAGTCATTTGCAC
GTGGCATCGATTCTCAA
TCGCGAATGTTTATTAA
ATAAGAGGGATTATCGT
ATTCAAATGATTCGCAA
ATAAGAACTATTATCGC
TCAAGAACCCTTATCGT
TCGCAACTCCTTCTCGA
AAGAAAGTCATTATCGT
AAGAGGATGGTTATCAT
ACCGGAATTATTTTCAA
AGCAGAATGATTTTCAG
ATCGAACTCATTCTCGA
ATGTGGATGATTACCGT
GTGATAAAGTTTCTCAG
TTGCGTTCGGTTCGCAT
TCAGGAATACTTCTCAT
CCGAGTTTCGTTCGCGT
ATGATCATGTTTCTCAG
ACGGTTACGATTATCAG
TTGCGCATGATTCGTGT
AAGAGAATCGTATGCAT
ACGATAGTGTTTTTCAG
TTGCGACGGGATCTCGT
GTGAGTGTCACTATCAT
ATAAAAATGTATTTCAT
GCGCGAGTAGTTATCAT
TCGCGAATGTCTTTCAC
ATGCAGATGAGTAGCAA
CTGCAAACCCATCTCGT
TTGAGGCCCATTTGCAA
CTGATTATCGTTCCCGC
ACAAAAATCCATCTCGA
CTGGGAATTGTTGTCAG
GTGCGCAGCATTCTCGA
ATCTGACTGATTATCGT
TTGCAAAGTCTTCTCGT
GCAGAAACGATTTTCAT
ATCGAAATGATTGGCGA
ATGAAAGCCTTTCTCGG
CTGCAACTGATTCTGGA
GCGAGACTGTTTCTTGT
GTGCCATCGATTCTTAT
ATGAGGATGCTCATCAA
AGCAGAATGACTCGCAA
TTGTGGTTGATTCGCGT
TCATCAATGATTCGCAA
ACCAGTATCATTCGTGT
ACCGAAATGACTCGCAA
ATGAGGTTGTTTACCAT
GGGCGAACAGTTCTCAT
TTCGTAATCATTTGCGG
ACGGGAGCGTTTATCGT
ATCGTACTGTTTCTCAT
CTGTTCATCATTCTCAA
GTGCCAATGCTCCGCAT
ATGCGGCTGCTTTGCAT
GCTGTAATCATTCTCAA
TTGCGCATGATAATCGA
AGGCGGCTGATTATCAT
GTGATTTGCATTTTCAT
ACAGGACTGATATTCAT
CTGGTAAAGTTTCTCGA
ATAGTTACGATTATCGT
GAGAAAATCACTCCCAA
ATAAGGCGCATTCGCAT
GGGGGAATTATTATCAG
CTGGTTGCGATTCTCAA
ATGAGCCTCATTCGCTT
CCAAGAAGGTTTCGCAA
GAAAGAATGATTGTCAC
GTGGGAGCGATAATCGT
GCGACATTGAATTGCAA
ACGATGATTGATCTCAA
TCGTTCATCATTTTCAT
ATAAGAGCGATTATTGA
CCGCTGGTGATTTTCAT
AGACCAATGCTTCTCAT
CTGCATATCGATATCAA
TCGTTAATCGCTTTCGT
GCGGCAATGATAGGCAT
TTAGCAATGGTTATCGG
AGGCGACTGAAACTCAA
ATAGTTCTGATTATCGT
CTAGGTATGAGTCGCGT
CTAGGTATGAGTCGCGT
ATCATGATGCTTGTCAT
AAGCAATTGATATTCAT
GCCGAACTGATTATCAA
ATACTTATGCATCTCAA
TTGGTATCTACTCGCAT
ATGTAACGCATTCTGAT
GCGAGGATGAATGTTAT
ACATCAATGACTATCAT
ATGCAAGCTGCTCTCAT
ACAATATTCGTTCTGGA
TCAAGAATTGCTCGCAG
TTGAGGAGTATTCGTGT
GGGGGAATGATACTCCT
ATGATCAGCATTCTGAC
GCAAAACTGCTTATCGT
CTGCAACTGCGTTTCAA
CTGGAACGTATTCTCAC
ATAGAAATTGTTTTCGC
TCGGTGTTGACTCGCAT
ATGTGAACTTTTCTTAA
GGAAGAATGATTTTTGA
CTGCATCTCGTTATCAG
ATGATTGCGGATCTCAG
ATGCATTCGGTTTGCGT
GCGCAAGTACTTCGCAA
ATGCTCTTAAATCTCAT
ATTGGAACAGTTCTCGT
AGCAAAACCATTTCCAA
GTGGCGATGATTTGCGG
GCCTCAATGATTCTCGG
ATGCCTCCCGTTTTCGT
GTGATTCTCATTGTTGT
TGGTGACTAATTTTCAT
AAGCCAATCACTCTGAA
TGCAGAACGGCTCTCAA
GCGCGGCGCATTCGCAG
ACGGGGATCGTTACGAA
TCATCAACGATTATCAG
ACGTCAACCGTTTGCGC
CTGAAAGATGTTCTCAC
GCTGGAATCATTCTTAG
ATGGCCTTTATTCGCAT
ACAGGTTTCACTCGCAA
GTAGGAATATTTTGCGT
CACTGAATGATTTTCAA
ATGTTATTGCTCCGCGT
CTGCCTGTGATTATTAT
AAAAGACTCAATGTCGT
TTGGATCTGATAACCAT
ATAGTACAGATTCGTAT
GCGGTATTGAGAATCGT
TTGAAGGTGAATTGCAG
GTAACAATGAGAAGCAA
CCCGGGACGGTTCTCGT
TTGCGCATGCGTATCGC
AATACAATCGTTCTCGT
ATCGCAATGGGTATCGC
ATGGTTGAGGTTATCGT
ACGCAACGTGTTCCCGA
TTGAAATGGTTTCGTAC
TTGAGTTTTGATCGCGC
ATGCGTCCGCTTCGCTT
GTGCTTTAGGTTATCAA
GTGATATTTGTTTACGA
CTGCAGATGAATATTGA
ATGACTCTTATTCTTGG
TCTAGAATGCATCCCAC
ATGGACACGATTATCTA
ATGACTTCATTTCGCAT
TTGGCGATAATAATCGT
ATGACTTTTATTCGCTA
TGCACATTGTTTCTCAT
TGGTGAATGGTAAGCGA
TTACGATGCTTACTCGT
GTCGCATTGTTTCGCAA
GTACCTTTCATTTGCAA
GTCCAAATGATAACTAT
CAGACTACCATTCTGAT
CTCATCACCATTGTCGT
GAGTGAAACGTTCTCGG
CCGTGATTTTGTCTCAT
CCGCAAGCGCTCCTCGT
ATGAGTCCTTTTAGCAG
GAGATTCTCAATCGCGT
TAGAGAAGCCTTTCTAA
TGCTGAATCATAAGCAT
CTGCAACTGCGTTACAT
CCGTGACTGAGTGGCGC
ACGGTATTGCGAATCAC
TTCGGTTTCATCTTCAA
CTGACTTTCAGTTGCGC
AGGCAAATAGAAATCAT
ATGAATATTTTTCCGAG
AGCAGAACGAGTATTGA
GTACCAGTTAATCGCAA
GCATAAATGTTTCTTGT
GTTGCAGCCATTCTCAA
TGCGAAACGATTCTTGA
TTCTTTCTGATTCTTAT
AGCAGAATGCGTTCCAC
GTGCGTCGTATTCTTGA
CCGCTGTTGTTTCTGAT
CTTGAAACGTTTCTCGA
ATACGTCATATTCGCAG
TCAGCAACCCCTATCGT
AAACGAAGCATTCCTGG
ACTACACCGAATCGCAA
ACGTAATTGATAACTGT
TGATGAATGATTTGTAC
GTCCGACGCCGTTTCAT
AAGATGTTGCATCTCAC
AGCGGCTTCGTTCTCAT
TGATGAGCGATTATCAC
AGCGTATCGCTTATCAT
TTGTCAGCAACTCGCGT
GACGAAATTGTTCTCAG
GGAGTAATTATTATTAA
TCGGCGCTGTTTATCGC
ACGCTGTACTTTTGCGT
CTGTTTCTGTTTAGCGA
CCGTAATTCGCACTCAC
AAGCTCCTGATTATTGT
TGGCCATCGCATCGCGA
CGAGGAACGCTTTACAT
TCGAAGGTGTGTTGCAG
TGCGCAGTGATCCGCAT
GAAGGAATACTTCTTAG
GTCATCATCGCAATCAT
ATCGGCAATATCCTCAA
TCTGGCATCGCTCTCGA
GAAAGACGCAACCGCAG

Quantitative data format: ChIP-peak, CSDeconv

TTGATAGTGATTCTCAT 23.852286
ATGAGAATTAATCTCAA 61.790566
ATGATATTCATTATCAA 53.703214
ATGAGAATGCTTGTCAA 89.427209
ATCATAACGATTCTCAT 51.242246
ATGCAAATGGTTCGCGA 190.125885
TTGAAAGTCATTCTCGA 30.346699
TCGGTAATGGTTCTCAA 90.85539
CTGAGAATGGTTTGCGT 51.404718
ATGCAAATCTTTCGCAT 59.927349
ATGAAGATCATTCTCGA 37.615555
GCGAGATTGATTTTCAA 137.031284
CTGGGAATGCTTATCAT 246.975508
TCGCGACTCATTGTCAT 34.929027
TTGATAACTGTTCTCAT 151.535352
ACGATATTGATTGTCGT 33.875592
ATGGGAATGCCTCTCGT 32.038434
ATACAACTGATTCTCAT 136.825847
GCGAGAACTATTCTCAC 96.453097
TTGATATCGATTTTCAA 68.740201
ACGGGAATGTTTCGCGA 45.868254
TTGCAAAAGGTTCTCAA 33.545045
TTGATTATCGTTCCCAA 85.10042
GTGGCATTGATTCTCAA 46.317962
ACATGAATGATTTTCAT 31.579707
TTGAGGAGCATTATCAA 43.438864
GTGCGAATGTTTCCCAC 25.775184
ATGATAATTGATATCAT 125.263354
ATGAGAATTGCTATCGT 69.447461
ACGGCAATGTTTCGCAT 33.971798
CTGATTATCGTTCCCAT 61.171214
TTGAGATTGTTTTGCAA 55.476124
CCGAGAGCCATTCGCGA 21.653741
TCGCAAATGTTTTTCAA 26.034456
GCGAGAGCGATTCGCAG 29.97072
ATGACCATCATTATCGT 27.932091
ATCAGAGTGATTCGCGC 21.471814
TCGACAAGGGTTTTCAT 85.697716
CTGCAATCGATTCGCAA 43.893558
TTGATGACGATTCGCAG 114.259884
ATCCGTTTCATTCTCAT 24.834987
GCGCAGATCATTATCAT 93.887254
ACAGAAATAATTCTCAA 29.76688
ATACGTATCATTCCCAC 24.109008
ACGAGATTGCTTCACGT 24.0474
TTGCGGACCGTTCCCAT 31.731526
CTGCCATTGATTCTCGG 20.034133
TCCGGAATGATTCGCGG 33.592493
ATGGGACTGAATAGCGA 27.140531
TTGGGTCTGATTTTCGT 55.423546
TCGCGAATTGATCTCGA 33.872837
CTGAAAGTCATTTGCAC 23.907672
GTGGCATCGATTCTCAA 33.74241
TCGCGAATGTTTATTAA 34.716523
ATAAGAGGGATTATCGT 154.172971
ATTCAAATGATTCGCAA 50.067976
ATAAGAACTATTATCGC 30.116521
TCAAGAACCCTTATCGT 117.185178
TCGCAACTCCTTCTCGA 22.249858
AAGAAAGTCATTATCGT 22.884307
AAGAGGATGGTTATCAT 29.519969
ACCGGAATTATTTTCAA 136.182196
AGCAGAATGATTTTCAG 28.836576
ATCGAACTCATTCTCGA 34.636182
ATGTGGATGATTACCGT 28.683707
GTGATAAAGTTTCTCAG 62.631279
TTGCGTTCGGTTCGCAT 48.772166
TCAGGAATACTTCTCAT 33.862431
CCGAGTTTCGTTCGCGT 25.754633
ATGATCATGTTTCTCAG 69.972019
ACGGTTACGATTATCAG 50.243319
TTGCGCATGATTCGTGT 46.949593
AAGAGAATCGTATGCAT 181.745539
ACGATAGTGTTTTTCAG 29.108564
TTGCGACGGGATCTCGT 30.720262
GTGAGTGTCACTATCAT 34.437274
ATAAAAATGTATTTCAT 37.116208
GCGCGAGTAGTTATCAT 41.679429
TCGCGAATGTCTTTCAC 22.280122
ATGCAGATGAGTAGCAA 42.873007
CTGCAAACCCATCTCGT 51.788734
TTGAGGCCCATTTGCAA 21.588092
CTGATTATCGTTCCCGC 38.188921
ACAAAAATCCATCTCGA 191.796347
CTGGGAATTGTTGTCAG 18.765899
GTGCGCAGCATTCTCGA 34.740688
ATCTGACTGATTATCGT 63.563872
TTGCAAAGTCTTCTCGT 77.238407
GCAGAAACGATTTTCAT 43.789533
ATCGAAATGATTGGCGA 25.29543
ATGAAAGCCTTTCTCGG 62.419587
CTGCAACTGATTCTGGA 48.902472
GCGAGACTGTTTCTTGT 31.892581
GTGCCATCGATTCTTAT 60.761903
ATGAGGATGCTCATCAA 42.245111
AGCAGAATGACTCGCAA 45.362449
TTGTGGTTGATTCGCGT 48.084243
TCATCAATGATTCGCAA 48.40294
ACCAGTATCATTCGTGT 34.295919
ACCGAAATGACTCGCAA 64.87415
ATGAGGTTGTTTACCAT 53.147051
GGGCGAACAGTTCTCAT 83.819881
TTCGTAATCATTTGCGG 26.09265
ACGGGAGCGTTTATCGT 21.150852
ATCGTACTGTTTCTCAT 34.279537
CTGTTCATCATTCTCAA 47.583597
GTGCCAATGCTCCGCAT 22.923503
ATGCGGCTGCTTTGCAT 139.669904
GCTGTAATCATTCTCAA 48.682925
TTGCGCATGATAATCGA 19.990686
AGGCGGCTGATTATCAT 80.453338
GTGATTTGCATTTTCAT 45.375922
ACAGGACTGATATTCAT 16.109486
CTGGTAAAGTTTCTCGA 25.098106
ATAGTTACGATTATCGT 52.276245
GAGAAAATCACTCCCAA 42.715443
ATAAGGCGCATTCGCAT 19.238491
GGGGGAATTATTATCAG 22.15722
CTGGTTGCGATTCTCAA 28.596898
ATGAGCCTCATTCGCTT 24.866948
CCAAGAAGGTTTCGCAA 44.579668
GAAAGAATGATTGTCAC 18.784284
GTGGGAGCGATAATCGT 28.291925
GCGACATTGAATTGCAA 56.871547
ACGATGATTGATCTCAA 37.789863
TCGTTCATCATTTTCAT 29.296922
ATAAGAGCGATTATTGA 40.148744
CCGCTGGTGATTTTCAT 25.876193
AGACCAATGCTTCTCAT 101.015225
CTGCATATCGATATCAA 58.085304
TCGTTAATCGCTTTCGT 31.256989
GCGGCAATGATAGGCAT 24.331083
TTAGCAATGGTTATCGG 31.645821
AGGCGACTGAAACTCAA 47.350422
ATAGTTCTGATTATCGT 45.132637
CTAGGTATGAGTCGCGT 97.95579
CTAGGTATGAGTCGCGT 97.95579
ATCATGATGCTTGTCAT 56.125224
AAGCAATTGATATTCAT 18.230639
GCCGAACTGATTATCAA 41.84816
ATACTTATGCATCTCAA 18.938925
TTGGTATCTACTCGCAT 47.764459
ATGTAACGCATTCTGAT 33.513357
GCGAGGATGAATGTTAT 39.765482
ACATCAATGACTATCAT 37.097011
ATGCAAGCTGCTCTCAT 57.330057
ACAATATTCGTTCTGGA 35.498145
TCAAGAATTGCTCGCAG 23.521177
TTGAGGAGTATTCGTGT 35.172499
GGGGGAATGATACTCCT 47.93046
ATGATCAGCATTCTGAC 41.975067
GCAAAACTGCTTATCGT 34.661063
CTGCAACTGCGTTTCAA 42.132088
CTGGAACGTATTCTCAC 70.030656
ATAGAAATTGTTTTCGC 41.508386
TCGGTGTTGACTCGCAT 29.098753
ATGTGAACTTTTCTTAA 19.390332
GGAAGAATGATTTTTGA 80.826618
CTGCATCTCGTTATCAG 32.487908
ATGATTGCGGATCTCAG 80.865907
ATGCATTCGGTTTGCGT 35.160561
GCGCAAGTACTTCGCAA 95.561833
ATGCTCTTAAATCTCAT 49.480822
ATTGGAACAGTTCTCGT 107.53361
AGCAAAACCATTTCCAA 50.527502
GTGGCGATGATTTGCGG 24.116883
GCCTCAATGATTCTCGG 35.998492
ATGCCTCCCGTTTTCGT 66.491593
GTGATTCTCATTGTTGT 21.167339
TGGTGACTAATTTTCAT 24.843488
AAGCCAATCACTCTGAA 21.219873
TGCAGAACGGCTCTCAA 22.32686
GCGCGGCGCATTCGCAG 14.690347
ACGGGGATCGTTACGAA 16.732819
TCATCAACGATTATCAG 36.364417
ACGTCAACCGTTTGCGC 47.722094
CTGAAAGATGTTCTCAC 46.22703
GCTGGAATCATTCTTAG 17.134799
ATGGCCTTTATTCGCAT 29.436836
ACAGGTTTCACTCGCAA 22.876085
GTAGGAATATTTTGCGT 57.357494
CACTGAATGATTTTCAA 25.730611
ATGTTATTGCTCCGCGT 32.624649
CTGCCTGTGATTATTAT 21.655901
AAAAGACTCAATGTCGT 36.692932
TTGGATCTGATAACCAT 50.88117
ATAGTACAGATTCGTAT 64.931938
GCGGTATTGAGAATCGT 25.427336
TTGAAGGTGAATTGCAG 42.972899
GTAACAATGAGAAGCAA 41.951912
CCCGGGACGGTTCTCGT 28.434157
TTGCGCATGCGTATCGC 20.54873
AATACAATCGTTCTCGT 84.160347
ATCGCAATGGGTATCGC 17.674063
ATGGTTGAGGTTATCGT 26.540707
ACGCAACGTGTTCCCGA 27.611298
TTGAAATGGTTTCGTAC 69.453452
TTGAGTTTTGATCGCGC 16.722759
ATGCGTCCGCTTCGCTT 20.58391
GTGCTTTAGGTTATCAA 60.896049
GTGATATTTGTTTACGA 54.698247
CTGCAGATGAATATTGA 49.082626
ATGACTCTTATTCTTGG 25.02803
TCTAGAATGCATCCCAC 45.833299
ATGGACACGATTATCTA 25.224534
ATGACTTCATTTCGCAT 31.227426
TTGGCGATAATAATCGT 49.835351
ATGACTTTTATTCGCTA 21.502517
TGCACATTGTTTCTCAT 46.513687
TGGTGAATGGTAAGCGA 56.63305
TTACGATGCTTACTCGT 25.959045
GTCGCATTGTTTCGCAA 16.736674
GTACCTTTCATTTGCAA 25.829242
GTCCAAATGATAACTAT 133.811096
CAGACTACCATTCTGAT 119.521706
CTCATCACCATTGTCGT 62.162801
GAGTGAAACGTTCTCGG 21.951551
CCGTGATTTTGTCTCAT 88.715842
CCGCAAGCGCTCCTCGT 29.219657
ATGAGTCCTTTTAGCAG 30.09793
GAGATTCTCAATCGCGT 19.781325
TAGAGAAGCCTTTCTAA 18.846456
TGCTGAATCATAAGCAT 26.212629
CTGCAACTGCGTTACAT 21.136511
CCGTGACTGAGTGGCGC 29.415826
ACGGTATTGCGAATCAC 66.560836
TTCGGTTTCATCTTCAA 23.102376
CTGACTTTCAGTTGCGC 23.874968
AGGCAAATAGAAATCAT 35.676069
ATGAATATTTTTCCGAG 18.902328
AGCAGAACGAGTATTGA 19.752437
GTACCAGTTAATCGCAA 16.307718
GCATAAATGTTTCTTGT 47.222788
GTTGCAGCCATTCTCAA 34.093121
TGCGAAACGATTCTTGA 38.649136
TTCTTTCTGATTCTTAT 67.529686
AGCAGAATGCGTTCCAC 51.010874
GTGCGTCGTATTCTTGA 46.995546
CCGCTGTTGTTTCTGAT 19.156172
CTTGAAACGTTTCTCGA 43.726684
ATACGTCATATTCGCAG 23.166319
TCAGCAACCCCTATCGT 62.400906
AAACGAAGCATTCCTGG 27.520355
ACTACACCGAATCGCAA 26.19551
ACGTAATTGATAACTGT 25.87994
TGATGAATGATTTGTAC 23.17317
GTCCGACGCCGTTTCAT 33.547167
AAGATGTTGCATCTCAC 25.835259
AGCGGCTTCGTTCTCAT 26.472921
TGATGAGCGATTATCAC 23.036263
AGCGTATCGCTTATCAT 22.345442
TTGTCAGCAACTCGCGT 26.390421
GACGAAATTGTTCTCAG 22.98013
GGAGTAATTATTATTAA 35.390912
TCGGCGCTGTTTATCGC 28.846199
ACGCTGTACTTTTGCGT 40.860142
CTGTTTCTGTTTAGCGA 69.497931
CCGTAATTCGCACTCAC 37.024895
AAGCTCCTGATTATTGT 29.021968
TGGCCATCGCATCGCGA 64.275361
CGAGGAACGCTTTACAT 22.105219
TCGAAGGTGTGTTGCAG 18.089757
TGCGCAGTGATCCGCAT 32.355377
GAAGGAATACTTCTTAG 34.033508
GTCATCATCGCAATCAT 38.702413
ATCGGCAATATCCTCAA 46.430695
TCTGGCATCGCTCTCGA 25.872741
GAAAGACGCAACCGCAG 38.757441

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TTGATAGTGATTCTCAT
... ... PSPTO_3573 PSPTO_3572 PSPTO_3571 PSPTO_3570 PSPTO_3574 PSPTO_3575
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAGAATTAATCTCAA
... ... prfC PSPTO_4580 PSPTO_4581 PSPTO_4582 PSPTO_4583 PSPTO_4584
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGATATTCATTATCAA
... ... PSPTO_4462 fumC-2 PSPTO_4460 sodA PSPTO_4458 ptsH PSPTO_4456 ptsN yfiA rpoN pmbA PSPTO_4464 tldD PSPTO_4466 PSPTO_4467
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAGAATGCTTGTCAA
... ... rnt PSPTO_4157 PSPTO_4156 argG PSPTO_4154 PSPTO_4159
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCATAACGATTCTCAT
... ... PSPTO_5649 deoC PSPTO_0974 PSPTO_0975 PSPTO_0976 PSPTO_0977 PSPTO_0978 PSPTO_0979 PSPTO_0980
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGCAAATGGTTCGCGA
... ... PSPTO_2329 PSPTO_2328 PSPTO_2330
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGAAAGTCATTCTCGA
... ... PSPTO_2546 PSPTO_2545 PSPTO_2544 PSPTO_2543 PSPTO_2542 PSPTO_2541 PSPTO_2540 PSPTO_2547 PSPTO_2548 PSPTO_2549 PSPTO_2550 PSPTO_2551 PSPTO_2552 PSPTO_2553 PSPTO_2554
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGGTAATGGTTCTCAA
... ... PSPTO_3772 PSPTO_3771 PSPTO_3770 PSPTO_3769 PSPTO_3768 PSPTO_3767 PSPTO_3773
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGAGAATGGTTTGCGT
... ... PSPTO_3698 PSPTO_3697 PSPTO_3696 PSPTO_5671
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGCAAATCTTTCGCAT
... ... PSPTO_4365 PSPTO_4366
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAAGATCATTCTCGA
... ... PSPTO_0979 PSPTO_0978 PSPTO_0977 PSPTO_0976 PSPTO_0975 PSPTO_0974 PSPTO_0980
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGAGATTGATTTTCAA
... ... PSPTO_3484 PSPTO_3483 PSPTO_3482 PSPTO_3481 PSPTO_3485
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGGGAATGCTTATCAT
... ... PSPTO_3462 glpQ pssA-2 PSPTO_3464 PSPTO_3465
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCGACTCATTGTCAT
... ... PSPTO_0267 PSPTO_0266 PSPTO_0265 PSPTO_0264 PSPTO_0263 PSPTO_0268
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGATAACTGTTCTCAT
... ... PSPTO_3691 PSPTO_3690 PSPTO_3689 PSPTO_3692
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGATATTGATTGTCGT
... ... PSPTO_4382 PSPTO_4381 PSPTO_4380 PSPTO_4383 PSPTO_4384
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGGGAATGCCTCTCGT
... ... dbpA PSPTO_5008 PSPTO_5009 PSPTO_5010
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATACAACTGATTCTCAT
... ... PSPTO_1284 PSPTO_1283 PSPTO_1282 PSPTO_1281 PSPTO_1285 PSPTO_1286 gap-1
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGAGAACTATTCTCAC
... ... PSPTO_2318 PSPTO_2317 PSPTO_2316 PSPTO_2315 PSPTO_2319
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGATATCGATTTTCAA
... ... PSPTO_3229 PSPTO_3228 PSPTO_3230
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGGGAATGTTTCGCGA
... ... PSPTO_3500 PSPTO_3499 PSPTO_3498 mmsA-3 iolI PSPTO_3495 iolG PSPTO_3493 PSPTO_3492 PSPTO_3491 PSPTO_3501 PSPTO_3502 PSPTO_3503 PSPTO_3504
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCAAAAGGTTCTCAA
... ... PSPTO_1992 anr apt PSPTO_1989 cheW-2 PSPTO_1987 PSPTO_1986 PSPTO_1985 motA-1 cheB-2 cheA-2 cheZ cheY-2 hemN PSPTO_1994 ccoS PSPTO_1996 PSPTO_1997 PSPTO_1998 PSPTO_1999 PSPTO_2000 ccoP ccoQ ccoO ccoN PSPTO_2005 PSPTO_2006 PSPTO_2007 PSPTO_2008
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGATTATCGTTCCCAA
... ... PSPTO_1967 fliK PSPTO_1965 PSPTO_1964 PSPTO_1963 PSPTO_1962 fliI PSPTO_1960 fliG fliF fliE PSPTO_1968 fliM fliN fliO fliP fliQ fliR flhB
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGGCATTGATTCTCAA
... ... metG PSPTO_4146 capB PSPTO_4148 nth PSPTO_4150 PSPTO_4151
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACATGAATGATTTTCAT
... ... metH PSPTO_2731 cti
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGAGGAGCATTATCAA
... ... PSPTO_0875 PSPTO_0874 PSPTO_0873 hopD1 hopQ1-1 PSPTO_0878
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGCGAATGTTTCCCAC
... ... PSPTO_1866 PSPTO_1865 PSPTO_1864 PSPTO_1863 PSPTO_1862 PSPTO_1861 PSPTO_1860 saxB saxA PSPTO_1867 hss
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGATAATTGATATCAT
... ... aceA nuoA nuoB nuoCD nuoE nuoF nuoG nuoH nuoI nuoJ nouK nuoL nuoM nuoN PSPTO_3378 PSPTO_3379 PSPTO_3380 PSPTO_3381 PSPTO_3382 PSPTO_3383 PSPTO_3384 PSPTO_3385 PSPTO_3386
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAGAATTGCTATCGT
... ... PSPTO_3448 PSPTO_3447 PSPTO_3446 PSPTO_3445 PSPTO_3444 PSPTO_3443 PSPTO_3442 PSPTO_3441 PSPTO_3440 PSPTO_3439 PSPTO_3449 PSPTO_3450
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGGCAATGTTTCGCAT
... ... cti metH PSPTO_2731 PSPTO_2734 yhgI
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGATTATCGTTCCCAT
... ... PSPTO_2281 cysH cysB pabB PSPTO_2283 PSPTO_2284 PSPTO_2285
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGAGATTGTTTTGCAA
... ... PSPTO_1800 PSPTO_1799 PSPTO_1798 PSPTO_1797 PSPTO_1796 trkH
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CCGAGAGCCATTCGCGA
... ... xseA PSPTO_1445 PSPTO_1447 PSPTO_1448 guaB guaA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCAAATGTTTTTCAA
... ... PSPTO_0859 PSPTO_0858 PSPTO_0857 PSPTO_0860 PSPTO_0861 PSPTO_0862 PSPTO_0863 PSPTO_0864 PSPTO_0865 PSPTO_0866 PSPTO_0867 PSPTO_0868 PSPTO_0869 PSPTO_5617
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGAGAGCGATTCGCAG
... ... PSPTO_2250 PSPTO_2249 PSPTO_2248 PSPTO_2251
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGACCATCATTATCGT
... ... PSPTO_5636 PSPTO_1114 PSPTO_1115 cfa PSPTO_1117 PSPTO_1118 PSPTO_1119 PSPTO_1120 phrB PSPTO_1122 PSPTO_1123
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCAGAGTGATTCGCGC
... ... PSPTO_1046 PSPTO_1045 PSPTO_1047 PSPTO_1048 dctM PSPTO_1050 dctP PSPTO_1052 PSPTO_1053
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGACAAGGGTTTTCAT
... ... PSPTO_0312 cysA PSPTO_0310 cysT sbp PSPTO_0307 PSPTO_0313 PSPTO_0314
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGCAATCGATTCGCAA
... ... PSPTO_0105 PSPTO_0104 dadX PSPTO_0102 dadA cycB PSPTO_0107 PSPTO_0108 PSPTO_0109 PSPTO_0110
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGATGACGATTCGCAG
... ... PSPTO_0181 trkA sun fmt def-1 PSPTO_0176 PSPTO_0175 PSPTO_0174 qor PSPTO_0172 PSPTO_0182 tag glyQ glyS PSPTO_0186 PSPTO_0187
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCCGTTTCATTCTCAT
... ... PSPTO_0043 PSPTO_0042 PSPTO_0041 PSPTO_0040 PSPTO_0039 hopK1 PSPTO_0045
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGCAGATCATTATCAT
... ... PSPTO_0451 PSPTO_0450 PSPTO_0449 PSPTO_0452 PSPTO_0453 PSPTO_0454 fdhA-1 purU-1
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACAGAAATAATTCTCAA
... ... PSPTO_2463 PSPTO_2462 PSPTO_2461 PSPTO_2460 PSPTO_2459 PSPTO_2458 PSPTO_2457 PSPTO_2464
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATACGTATCATTCCCAC
... ... PSPTO_0835 PSPTO_0834 PSPTO_0836 PSPTO_0837 PSPTO_0838
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGAGATTGCTTCACGT
... ... PSPTO_0276 PSPTO_0275 PSPTO_0274 PSPTO_0273 PSPTO_0277 PSPTO_0278 PSPTO_0279
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCGGACCGTTCCCAT
... ... PSPTO_2880 PSPTO_2879 PSPTO_2878 PSPTO_2877 PSPTO_2876 PSPTO_2875 PSPTO_2874 PSPTO_2873 PSPTO_2872 PSPTO_2871 PSPTO_2870 PSPTO_2869 PSPTO_2868 PSPTO_2867 PSPTO_5672 PSPTO_2881 PSPTO_2882
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGCCATTGATTCTCGG
... ... PSPTO_4612 PSPTO_4611 PSPTO_4613 PSPTO_4614 ppa-2 eno-2 PSPTO_4617
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCCGGAATGATTCGCGG
... ... PSPTO_2893 PSPTO_2892 PSPTO_2891 PSPTO_2890 PSPTO_2889 PSPTO_2894
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGGGACTGAATAGCGA
... ... pdxY PSPTO_5520 PSPTO_5522 PSPTO_5523 PSPTO_5524 PSPTO_5525 PSPTO_5526 PSPTO_5527 PSPTO_5528
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGGGTCTGATTTTCGT
... ... atpB atpE atpF atpH atpA atpG atpD atpC glmU atpI PSPTO_5607 PSPTO_5608 gidB gidA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCGAATTGATCTCGA
... ... htpG PSPTO_2207 brnQ PSPTO_2209
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGAAAGTCATTTGCAC
... ... PSPTO_3691 PSPTO_3690 PSPTO_3689 PSPTO_3692
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGGCATCGATTCTCAA
... ... algI algJ algF algA PSPTO_1231 PSPTO_1230 algL algX algG algE algK PSPTO_1241 PSPTO_1242 algD
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCGAATGTTTATTAA
... ... gnd zwf-2 PSPTO_3120 PSPTO_3119 alkB PSPTO_3117 PSPTO_3116 PSPTO_3115 PSPTO_3114 PSPTO_3123 PSPTO_3124
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATAAGAGGGATTATCGT
... ... PSPTO_4366 PSPTO_4367 PSPTO_4368 PSPTO_4369 PSPTO_4370 inaA PSPTO_4372
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATTCAAATGATTCGCAA
... ... azu PSPTO_4924 PSPTO_4925 PSPTO_4926
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATAAGAACTATTATCGC
... ... PSPTO_3948 PSPTO_3947 PSPTO_3946 PSPTO_3945 PSPTO_3944 PSPTO_3943 PSPTO_3942 PSPTO_3941 PSPTO_3940 PSPTO_3939 PSPTO_3938 PSPTO_3937 PSPTO_3936 PSPTO_3935 PSPTO_3934 PSPTO_3933 PSPTO_3932 PSPTO_3931 PSPTO_3949 tRNA-Ser-4 purC PSPTO_3951 PSPTO_3952 dapA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCAAGAACCCTTATCGT
... ... PSPTO_5658 PSPTO_3255 PSPTO_3254 PSPTO_3256 PSPTO_3257 PSPTO_3258 PSPTO_3259 PSPTO_3260 PSPTO_3261
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCAACTCCTTCTCGA
... ... cobH cobI PSPTO_4874 PSPTO_4877 cobL cbiD PSPTO_4880
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
AAGAAAGTCATTATCGT
... ... PSPTO_3136 PSPTO_3135 PSPTO_3134 PSPTO_3133 PSPTO_3132 PSPTO_3131 glgX PSPTO_3137 PSPTO_3138 PSPTO_3139 PSPTO_3140 PSPTO_3141
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
AAGAGGATGGTTATCAT
... ... PSPTO_2251 PSPTO_2250 PSPTO_2249 PSPTO_2248 PSPTO_2252 PSPTO_2253 PSPTO_2254 PSPTO_2255
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACCGGAATTATTTTCAA
... ... PSPTO_4128 PSPTO_4129 PSPTO_4130
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
AGCAGAATGATTTTCAG
... ... PSPTO_3449 PSPTO_3448 PSPTO_3447 PSPTO_3446 PSPTO_3445 PSPTO_3444 PSPTO_3443 PSPTO_3442 PSPTO_3441 PSPTO_3440 PSPTO_3439 PSPTO_3450
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCGAACTCATTCTCGA
... ... PSPTO_3561 PSPTO_3560 glcB-2 glcG glcF glcE glcD PSPTO_3562 gntR
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGTGGATGATTACCGT
... ... PSPTO_5381 PSPTO_5380 PSPTO_5379 PSPTO_5378 PSPTO_5377 PSPTO_5382 PSPTO_5383 PSPTO_5384
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGATAAAGTTTCTCAG
... ... PSPTO_2227 PSPTO_2226 PSPTO_2225 fimD papD fimA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCGTTCGGTTCGCAT
... ... glgX PSPTO_3129 PSPTO_3128 malQ PSPTO_3126 glgA PSPTO_3131 PSPTO_3132 PSPTO_3133 PSPTO_3134 PSPTO_3135
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCAGGAATACTTCTCAT
... ... pilC pilD coaE PSPTO_0922 pilB
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CCGAGTTTCGTTCGCGT
... ... PSPTO_2805 PSPTO_2804 PSPTO_2803 PSPTO_2806 PSPTO_2807 PSPTO_2808
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGATCATGTTTCTCAG
... ... PSPTO_3853 PSPTO_3852 PSPTO_3851 PSPTO_3850 PSPTO_3849 PSPTO_3854 PSPTO_3855
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGGTTACGATTATCAG
... ... PSPTO_1179 trxB PSPTO_1180 folB-2 folE-1 PSPTO_1183
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCGCATGATTCGTGT
... ... cdsA-2 PSPTO_5540 PSPTO_5539 PSPTO_5538 PSPTO_5537 PSPTO_5536 PSPTO_5542
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
AAGAGAATCGTATGCAT
... ... mmsB mmsA-2 PSPTO_0784
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACGATAGTGTTTTTCAG
... ... PSPTO_2289 prpC PSPTO_2290 PSPTO_2291
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCGACGGGATCTCGT
... ... clpX lon-1 hupB clpP-2 tig
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGAGTGTCACTATCAT
... ... PSPTO_2224 PSPTO_2223 PSPTO_2222 PSPTO_2225 PSPTO_2226 PSPTO_2227 fimD papD fimA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATAAAAATGTATTTCAT
... ... PSPTO_3436 PSPTO_3435 PSPTO_3437 iscS-3
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGCGAGTAGTTATCAT
... ... PSPTO_2531 PSPTO_2530 PSPTO_2529 PSPTO_2532 PSPTO_2533 PSPTO_2534 PSPTO_2535 PSPTO_2536 PSPTO_2537 PSPTO_2538 hcp-1
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TCGCGAATGTCTTTCAC
... ... elbB PSPTO_5252 PSPTO_5254
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGCAGATGAGTAGCAA
... ... PSPTO_4067 PSPTO_4066 PSPTO_4065 PSPTO_4064 dctA-2 PSPTO_4062 PSPTO_4061 PSPTO_4060 fdxA PSPTO_4068 PSPTO_4069 PSPTO_4070 PSPTO_4071 PSPTO_4072 fmdA PSPTO_4074 PSPTO_4075 PSPTO_4076 PSPTO_4077 PSPTO_4078
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGCAAACCCATCTCGT
... ... PSPTO_4372 inaA PSPTO_4370 PSPTO_4369 PSPTO_4368 PSPTO_4367 colS colR
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGAGGCCCATTTGCAA
... ... bioA PSPTO_5074 PSPTO_5073 PSPTO_5072 PSPTO_5071 PSPTO_5076 PSPTO_5077 PSPTO_5078 madM madL PSPTO_5081 PSPTO_5082 mdcE mdcD mdcC mdcB mdcA PSPTO_5088 PSPTO_5089 PSPTO_5090
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGATTATCGTTCCCGC
... ... PSPTO_5215 PSPTO_5214 PSPTO_5216
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ACAAAAATCCATCTCGA
... ... PSPTO_0140 PSPTO_0139 PSPTO_0138 PSPTO_0137 PSPTO_0136 PSPTO_0141
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGGGAATTGTTGTCAG
... ... PSPTO_5547 PSPTO_5546 PSPTO_5545 PSPTO_5548 PSPTO_5549 PSPTO_5550 PSPTO_5551
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGCGCAGCATTCTCGA
... ... PSPTO_2266 greB-1 PSPTO_2264 PSPTO_2267 PSPTO_2268 PSPTO_2269 PSPTO_2270 PSPTO_2271
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCTGACTGATTATCGT
... ... rluA minE minD PSPTO_3876 PSPTO_3877
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
TTGCAAAGTCTTCTCGT
... ... PSPTO_4367 PSPTO_4368 PSPTO_4369 PSPTO_4370 inaA PSPTO_4372
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCAGAAACGATTTTCAT
... ... PSPTO_1737 PSPTO_1736 PSPTO_1735 PSPTO_1734 PSPTO_1738 PSPTO_1739
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATCGAAATGATTGGCGA
... ... PSPTO_1075 PSPTO_1074 PSPTO_1073 PSPTO_1072 PSPTO_1071 PSPTO_1070 PSPTO_1069 PSPTO_1068 PSPTO_1067 PSPTO_1076 rfbC-1
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAAAGCCTTTCTCGG
... ... PSPTO_0525 PSPTO_0524 PSPTO_0526
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
CTGCAACTGATTCTGGA
... ... PSPTO_4467 PSPTO_4466 tldD PSPTO_4464 pmbA cafA maf-2 PSPTO_4470 mreC
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GCGAGACTGTTTCTTGT
... ... PSPTO_3625 PSPTO_3624 PSPTO_3626 cycH cycL dsbE ccmF ccmE ccmD ccmC ccmB ccmA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
GTGCCATCGATTCTTAT
... ... PSPTO_3078 PSPTO_3077 PSPTO_3076 PSPTO_3075 PSPTO_3079 PSPTO_3080 PSPTO_3081 PSPTO_3082 PSPTO_3083 PSPTO_3084 PSPTO_3085
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
ATGAGGATGCTCATCAA
... ... 4000000 PSPTO_3530 PSPTO_3529 PSPTO_3531 PSPTO_3532 PSPTO_3533 PSPTO_3534 PSPTO_3535 PSPTO_3536 PSPTO_3537 PSPTO_3538 PSPTO_3539 PSPTO_3540 PSPTO_3541 PSPTO_3542 PSPTO_3543
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - not specified dimer
AGCAGAATGACTCGCAA
... ... PSPTO_0909 cheB-1 PSPTO_0907 cheR-1 cheW-1 PSPTO_0912 cheA-1 PSPTO_0914 cheY-1 PSPTO_0916
Experimental technique details ChIP-Seq (ECO:0006009