Species list

CollecTF taxonomy

Acidobacteria (phylum)
- Acidobacteriia (class)
  - Acidobacteriales (order)
    - Acidobacteriaceae (family)
      - Acidobacterium (genus)
        
        Acidobacterium capsulatum (species) - NC_012483.1
Actinobacteria (phylum)
- Actinobacteria (class)
  - Actinomycetales (order)
    - Corynebacteriaceae (family)
      - Corynebacterium (genus)
        
        Corynebacterium diphtheriae (species) - NC_016801.1
        
        Corynebacterium glutamicum (species) - NC_006958.1
    - Mycobacteriaceae (family)
      - Mycobacterium (genus)
        
        Mycobacterium avium (species) - NC_002944.2
        
        Mycobacterium leprae (species) - NC_002677.1
        
        Mycobacterium smegmatis (species) - NC_008596.1
        
        Mycobacterium sp. JLS (species) - NC_009077.1
        
        Mycobacterium sp. KMS (species) - NC_008705.1
        
        Mycobacterium tuberculosis (species) - NC_018143.1
        
        Mycobacterium vanbaalenii (species) - NC_008726.1
    - Nocardiaceae (family)
      - Nocardia (genus)
        
        Nocardia farcinica (species) - NC_006361.1
    - Pseudonocardiaceae (family)
      - Saccharopolyspora (genus)
        
        Saccharopolyspora erythraea (species) - NC_009142.1
    - Streptomycetaceae (family)
      - Streptomyces (genus)
        
        Streptomyces coelicolor (species) - NC_003888.3
        
        Streptomyces flavovirens (species) - NC_001425.2
        
        Streptomyces griseus (species) - NC_010572.1
        
        Streptomyces venezuelae (species) - NC_018750.1
  - Pseudonocardiales (order)
Chlamydiae (phylum)
- Chlamydiia (class)
  - Chlamydiales (order)
    - Chlamydiaceae (family)
      - Chlamydia (genus)
        
        Chlamydia pneumoniae (species) - NC_000922.1
      - Chlamydophila (genus)
        
        Chlamydophila caviae (species) - NC_003361.3
Chloroflexi (phylum)
- Dehalococcoidia (class)
  - Dehalococcoidales (order)
    - Dehalococcoidaceae (family)
      - Dehalococcoides (genus)
        
        Dehalococcoides mccartyi (species) - NC_002936.3
Cyanobacteria (phylum)
- Chroococcales (class)
  - Synechocystis (order)
    - Synechocystis sp. PCC 6803 (family)
- Nostocales (class)
  - Nostocaceae (order)
    - Anabaena (family)
      - Anabaena sp. 90 (genus)
    - Nostoc (family)
      - Nostoc sp. PCC 7120 (genus)
Deinococcus-Thermus (phylum)
- Deinococci (class)
  - Thermales (order)
    - Thermaceae (family)
      - Thermus (genus)
        
        Thermus thermophilus (species) - NC_005835.1
Fibrobacteres (phylum)
- Fibrobacteria (class)
  - Fibrobacterales (order)
    - Fibrobacteraceae (family)
      - Fibrobacter (genus)
        
        Fibrobacter succinogenes (species) - NC_013410.1
Firmicutes (phylum)
- Bacilli (class)
  - Bacillales (order)
    - Bacillaceae (family)
      - Bacillus (genus)
        
        Bacillus amyloliquefaciens (species) - NC_009725.1
        
        Bacillus anthracis (species) - NC_005945.1
        
        Bacillus cytotoxicus (species) - NC_009674.1
        
        Bacillus subtilis (species) - NC_000964.3
      - Geobacillus (genus)
        
        Geobacillus thermodenitrificans (species) -
    - Listeriaceae (family)
      - Listeria (genus)
        
        Listeria monocytogenes (species) - NC_003210.1
    - Paenibacillaceae (family)
      - Paenibacillus (genus)
        
        Paenibacillus mucilaginosus (species) - NC_017672.3
    - Staphylococcaceae (family)
      - Staphylococcus (genus)
        
        Staphylococcus aureus (species) - NC_002951.2
  - Lactobacillales (order)
    - Enterococcaceae (family)
      - Enterococcus (genus)
        
        Enterococcus faecalis (species) - NC_004668.1
    - Lactobacillaceae (family)
      - Lactobacillus (genus)
        
        Lactobacillus casei (species) - NC_010999.1
        
        Lactobacillus plantarum (species) - NC_004567.2
    - Streptococcaceae (family)
      - Lactococcus (genus)
        
        Lactococcus lactis (species) - NC_009004.1
      - Streptococcus (genus)
        
        Streptococcus agalactiae (species) - NC_010096.1
        
        Streptococcus gordonii (species) - NC_009785.1
        
        Streptococcus infantarius (species) -
        
        Streptococcus intermedius (species) - NC_018073.1
        
        Streptococcus lutetiensis (species) - NC_021900.1
        
        Streptococcus mutans (species) - NC_004350.2
        
        Streptococcus oligofermentans (species) - NC_021175.1
        
        Streptococcus parasanguinis (species) - NC_017905.1
        
        Streptococcus pneumoniae (species) - NC_008533.1
        
        Streptococcus pyogenes (species) - NC_004070.1
        
        Streptococcus salivarius (species) - NC_017594.1
        
        Streptococcus suis (species) - NC_009442.1
        
        Streptococcus thermophilus (species) - NC_008532.1
        
        Streptococcus uberis (species) - NC_012004.1
- Clostridia (class)
  - Clostridiales (order)
    - Clostridiaceae (family)
      - Clostridium (genus)
        
        Clostridium acetobutylicum (species) - NC_003030.1
        
        Clostridium botulinum (species) -
    - Peptostreptococcaceae (family)
      - Peptoclostridium (genus)
        
        Peptoclostridium difficile (species) - NC_009089.1
Proteobacteria (phylum)
- Alphaproteobacteria (class)
  - Caulobacterales (order)
    - Caulobacteraceae (family)
      - Caulobacter (genus)
        
        Caulobacter vibrioides (species) - NC_002696.2
  - Magnetococcales (order)
    - Magnetococcaceae (family)
      - Magnetococcus (genus)
        
        Magnetococcus marinus (species) - NC_008576.1
  - Rhizobiales (order)
    - Bradyrhizobiaceae (family)
      - Bradyrhizobium (genus)
        
        Bradyrhizobium diazoefficiens (species) - NC_004463.1
        
        Bradyrhizobium japonicum (species) - NC_017249.1
    - Brucellaceae (family)
      - Brucella (genus)
        
        Brucella abortus (species) -
    - Rhizobiaceae (family)
      - Agrobacterium (genus)
        
        Agrobacterium fabrum (species) - NC_003063.2
        
        Agrobacterium tumefaciens (species) - NC_002377.1
      - Sinorhizobium (genus)
        
        Sinorhizobium meliloti (species) - NC_003047.1
  - Rhodobacterales (order)
    - Rhodobacteraceae (family)
      - Paracoccus (genus)
        
        Paracoccus denitrificans (species) - NC_008686.1
      - Rhodobacter (genus)
        
        Rhodobacter capsulatus (species) - NC_014034.1
        
        Rhodobacter sphaeroides (species) - NC_007493.1
- Betaproteobacteria (class)
  - Burkholderiales (order)
    - Alcaligenaceae (family)
      - Bordetella (genus)
        
        Bordetella pertussis (species) - NC_017223.1
        
        Bordetella petrii (species) - NC_010170.1
    - Burkholderiaceae (family)
      - Burkholderia (genus)
        
        Burkholderia pseudomallei (species) - NC_017832.1
        
        Burkholderia thailandensis (species) - NC_007651.1
      - Ralstonia (genus)
        
        Ralstonia solanacearum (species) - NC_003295.1
    - Comamonadaceae (family)
      - Acidovorax (genus)
        
        Acidovorax sp. KKS102 (species) - NC_018708.1
  - Neisseriales (order)
    - Neisseriaceae (family)
      - Neisseria (genus)
        
        Neisseria gonorrhoeae (species) - NC_002946.2
        
        Neisseria meningitidis (species) - NC_003112.2
  - Nitrosomonadales (order)
    - Nitrosomonadaceae (family)
      - Nitrosomonas (genus)
        
        Nitrosomonas europaea (species) - NC_004757.1
- Deltaproteobacteria (class)
  - Bdellovibrionales (order)
    - Bdellovibrionaceae (family)
      - Bdellovibrio (genus)
        
        Bdellovibrio bacteriovorus (species) - NC_005363.1
  - Desulfuromonadales (order)
    - Geobacteraceae (family)
      - Geobacter (genus)
        
        Geobacter sulfurreducens (species) - NC_002939.5
  - Myxococcales (order)
    - Myxococcaceae (family)
      - Myxococcus (genus)
        
        Myxococcus xanthus (species) - NC_008095.1
- Epsilonproteobacteria (class)
  - Campylobacterales (order)
    - Campylobacteraceae (family)
      - Campylobacter (genus)
        
        Campylobacter jejuni (species) - NC_002163.1
    - Helicobacteraceae (family)
      - Helicobacter (genus)
        
        Helicobacter hepaticus (species) - NC_004917.1
        
        Helicobacter mustelae (species) - NC_013949.1
        
        Helicobacter pylori (species) - NC_011333.1
- Gammaproteobacteria (class)
  - Acidithiobacillales (order)
    - Acidithiobacillaceae (family)
      - Acidithiobacillus (genus)
        
        Acidithiobacillus ferrooxidans (species) - NC_011761.1
  - Aeromonadales (order)
    - Aeromonadaceae (family)
      - Aeromonas (genus)
        
        Aeromonas salmonicida (species) -
  - Alteromonadales (order)
    - Shewanellaceae (family)
      - Shewanella (genus)
        
        Shewanella oneidensis (species) - NC_004347.2
        
        Shewanella piezotolerans (species) - NC_011566.1
        
        Shewanella sp. ANA-3 (species) - NC_008577.1
  - Enterobacteriales (order)
    - Enterobacteriaceae (family)
      - Citrobacter (genus)
        
        Citrobacter rodentium (species) - NC_013716.1
      - Dickeya (genus)
        
        Dickeya dadantii (species) - NC_014500.1
      - Erwinia (genus)
        
        Erwinia amylovora (species) - NC_013971.1
        
        Erwinia sp. Ejp617 (species) - NC_017445.1
      - Escherichia (genus)
        
        Escherichia coli (species) - NC_000913.2
      - Pectobacterium (genus)
        
        Pectobacterium atrosepticum (species) - NC_004547.2
        
        Pectobacterium carotovorum (species) - NC_018525.1
      - Providencia (genus)
        
        Providencia stuartii (species) - NC_019375.1
      - Salmonella (genus)
        
        Salmonella enterica (species) - NC_003197.1
      - Yersinia (genus)
        
        Yersinia enterocolitica (species) - NC_008800.1
        
        Yersinia pestis (species) - NC_004088.1
        
        Yersinia pseudotuberculosis (species) - NC_010465.1
  - Pasteurellales (order)
    - Pasteurellaceae (family)
      - Actinobacillus (genus)
        
        Actinobacillus pleuropneumoniae (species) - NC_009053.1
      - Haemophilus (genus)
        
        Haemophilus influenzae (species) - NC_000907.1
      - Pasteurella (genus)
        
        Pasteurella multocida (species) - NC_002663.1
  - Pseudomonadales (order)
    - Moraxellaceae (family)
      - Acinetobacter (genus)
        
        Acinetobacter baumannii (species) - NC_009085.1
    - Pseudomonadaceae (family)
      - Pseudomonas (genus)
        
        Pseudomonas aeruginosa (species) - NC_002516.2
        
        Pseudomonas alcaligenes (species) - NC_005909.1
        
        Pseudomonas brassicacearum (species) - NC_015379.1
        
        Pseudomonas entomophila (species) - NC_008027.1
        
        Pseudomonas fluorescens (species) - NC_007492.2
        
        Pseudomonas fulva (species) - NC_015556.1
        
        Pseudomonas mendocina (species) - NC_009439.1
        
        Pseudomonas migulae (species) - NC_021250.1
        
        Pseudomonas poae (species) - NC_020209.1
        
        Pseudomonas protegens (species) - NC_004129.6
        
        Pseudomonas putida (species) - NC_002947.3
        
        Pseudomonas resinovorans (species) - NC_004444.1
        
        Pseudomonas savastanoi (species) - NC_005773.3
        
        Pseudomonas sp. CT14 (species) - NC_010891.1
        
        Pseudomonas sp. GLE121 (species) - NC_021212.1
        
        Pseudomonas sp. MC1 (species) - NC_016644.1
        
        Pseudomonas sp. S-47 (species) - NC_006988.1
        
        Pseudomonas sp. SLT2001 (species) - NC_003892.2
        
        Pseudomonas sp. TKP (species) - NC_023064.1
        
        Pseudomonas sp. UW4 (species) - NC_019670.1
        
        Pseudomonas sp. VLB120 (species) - NC_022739.1
        
        Pseudomonas stutzeri (species) - NC_009434.1
        
        Pseudomonas syringae (species) - NC_007005.1
        
        Pseudomonas syringae group genomosp. 3 (species) - NC_004578.1
  - Vibrionales (order)
    - Vibrionaceae (family)
      - Aliivibrio (genus)
        
        Aliivibrio fischeri (species) - NC_011186.1
        
        Aliivibrio salmonicida (species) - NC_011312.1
      - Vibrio (genus)
        
        Vibrio anguillarum (species) - NC_015637.1
        
        Vibrio campbellii (species) - NC_009784.1
        
        Vibrio cholerae (species) - NC_002506.1
        
        Vibrio nigripulchritudo (species) - NC_015156.1
        
        Vibrio parahaemolyticus (species) - NC_004603.1
        
        Vibrio vulnificus (species) - NC_005140.1
  - Xanthomonadales (order)
    - Xanthomonadaceae (family)
      - Xanthomonas (genus)
        
        Xanthomonas albilineans (species) - NC_013722.1
        
        Xanthomonas alfalfae (species) - NC_016010.1
        
        Xanthomonas axonopodis (species) - NC_020800.1
        
        Xanthomonas campestris (species) - NC_003902.1
        
        Xanthomonas citri (species) - NC_003919.1
        
        Xanthomonas euvesicatoria (species) - NC_007508.1
        
        Xanthomonas oryzae (species) - NC_006834.1
      - Xylella (genus)
        
        Xylella fastidiosa (species) - NC_002488.3
- Pseudomonas sp. ADP (class)
Spirochaetes (phylum)
- Spirochaetia (class)
  - Spirochaetales (order)
    - Leptospiraceae (family)
      - Leptospira (genus)
        
        Leptospira interrogans (species) - NC_005824.1
    - Spirochaetaceae (family)
      - Borrelia (genus)
        
        Borrelia burgdorferi (species) - NC_018979.1
Thermotogae (phylum)
- Thermotogae (class)
  - Thermotogales (order)
    - Thermotogaceae (family)
      - Petrotoga (genus)
        
        Petrotoga mobilis (species) - NC_010003.1