Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002e4c0
Genome
Rhodobacter capsulatus - NC_014034.1
TF
LexA [UniProtKB:D5ALN0, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GAACAAGACAGGAAC + [1892424, 1892438] 26833411 Experimental technique details EMSA (ECO:0001807) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - Experimental technique details Regular expression search (ECO:0005662) - 1132

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... recA RCAP_rcc01750 alaS RCAP_rcc01753 RCAP_rcc01754 cysS RCAP_rcc01756 RCAP_rcc01757 mcpA2 cheB2 cheD
Gene Locus tag Description
recA RCAP_rcc01751 RecA protein
RCAP_rcc01750 RCAP_rcc01750 hypothetical protein
alaS RCAP_rcc01752 alanyl-tRNA synthetase
RCAP_rcc01753 RCAP_rcc01753 hypothetical protein
RCAP_rcc01754 RCAP_rcc01754 class II glutamine amidotransferase
cysS RCAP_rcc01755 cysteinyl-tRNA synthetase
RCAP_rcc01756 RCAP_rcc01756 2-isopropylmalate synthase/homocitrate synthase
RCAP_rcc01757 RCAP_rcc01757 phytoene synthase
mcpA2 RCAP_rcc01758 methyl-accepting chemotaxis protein McpA
cheB2 RCAP_rcc01759 chemotaxis response regulator protein-glutamate methylesterase CheB
cheD RCAP_rcc01760 chemoreceptor glutamine deamidase CheD