Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002dcf0
Genome
Helicobacter mustelae - NC_013949.1
TF
NikR [UniProtKB:D3UIX2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TAATAATTTTTGATATAAATTATTA - [1415738, 1415762] 19894125 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - 1107

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... HMU13070 hisI HMU13050 ilvE deaD ureB2 ureA2
Gene Locus tag Description
HMU13070 HMU13070 periplasmic protein
hisI HMU13060 [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]
HMU13050 HMU13050 hypothetical protein
ilvE HMU13040 branched-chain amino acid aminotransferase
deaD HMU13030 DEAD box helicase
ureB2 HMU13010 urease subunit alpha
ureA2 HMU13020 urease subunits beta and gamma