Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002d8c0
Genome
Bacillus subtilis - NC_000964.3
TF
CatR [UniProtKB:O32238, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTACATTAAGTAA + [897548, 897560] 20639328 Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details MALDI-TOF Mass Spectrometry (ECO:0005527) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) - 1086

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... catD catE yfiF
Gene Locus tag Description
catD BSU08230 catechol-2,3-dioxygenase membrane subunit
catE BSU08240 catechol-2,3-dioxygenase subunit
yfiF BSU08250 AraC family transcriptional regulator