Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002d360
Genome
Helicobacter pylori - NC_011333.1
TF
Fur [UniProtKB:B5Z6G7, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATTTTATCATAAAAATCTATTTAATGAGAATTAGGTAAA + [668671, 668709] 11886560 Experimental technique details 2D PAGE (ECO:0005614) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) - 1054

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... HPG27_615 HPG27_614 HPG27_613 HPG27_616 HPG27_617 HPG27_618 HPG27_619 gatB HPG27_621 HPG27_622 HPG27_623 rnc HPG27_625 HPG27_626 HPG27_627 HPG27_628 HPG27_629 HPG27_630
Gene Locus tag Description
HPG27_615 HPG27_615 non heme iron-containing ferritin
HPG27_614 HPG27_614 phospho serine phosphatase
HPG27_613 HPG27_613 alpha1,3-fucosyl transferase
HPG27_616 HPG27_616 hypothetical protein
HPG27_617 HPG27_617 protective surface antigen D15
HPG27_618 HPG27_618 hypothetical protein
HPG27_619 HPG27_619 processing protease
gatB HPG27_620 aspartyl/glutamyl-tRNA amidotransferase subunit B
HPG27_621 HPG27_621 hypothetical protein
HPG27_622 HPG27_622 hypothetical protein
HPG27_623 HPG27_623 ribonuclease H
rnc HPG27_624 ribonuclease III
HPG27_625 HPG27_625 chorismate synthase
HPG27_626 HPG27_626 hypothetical protein
HPG27_627 HPG27_627 coproporphyrinogen III oxidase
HPG27_628 HPG27_628 glycerol-3-phosphate dehydrogenase
HPG27_629 HPG27_629
HPG27_630 HPG27_630 hypothetical protein