Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002c850
Genome
Shewanella oneidensis - NC_004347.2
TF
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTAATTTAAATGTTA + [895587, 895601] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... csgB csgA SO_0867
Gene Locus tag Description
csgB SO_0866 minor curlin subunit CsgB
csgA SO_0865 major curlin subunit CsgA
SO_0867 SO_0867 collagenolytic serine protease