Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002bf30
Genome
Escherichia coli - NC_007779.1
TF
CsgD [UniProtKB:P52106, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AAAGGCGCTAAATA + [2015206, 2015219] 21421764 Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 994

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... fliE fliF fliG fliH fliI fliJ fliK fliL fliM fliN fliO fliP fliQ fliR
Gene Locus tag Description
fliE Y75_p1907 flagellar basal-body component
fliF Y75_p1908 flagellar basal-body MS-ring and collar protein
fliG Y75_p1909 flagellar motor switching and energizing component
fliH Y75_p1910 flagellar biosynthesis protein
fliI Y75_p1911 flagellum-specific ATP synthase
fliJ Y75_p1912 flagellar protein
fliK Y75_p1913 flagellar hook-length control protein
fliL Y75_p1914 flagellar biosynthesis protein
fliM Y75_p1915 flagellar motor switching and energizing component
fliN Y75_p1916 flagellar motor switching and energizing component
fliO Y75_p1917 flagellar biosynthesis protein
fliP Y75_p1918 flagellar biosynthesis protein
fliQ Y75_p1919 flagellar biosynthesis protein
fliR Y75_p1920 flagellar export pore protein