Transcription Factor Binding Site Information

Vibrio cholerae - NC_002505.1
HapR [UniProtKB:A0A0H3Q915, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TCACTGATAAACTTATCGGT - [422433, 422452] 23382174 Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - 989

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... VC0396 VC0397 VC0398 VC0399 VC0400 VC0401 VC0402 VC0403 VC0404 VC0405 VC0406 VC0407 VC0408 VC0409 VC0410 VC0411 VC0412 VC0413 VC0414
Gene Locus tag Description
VC0396 VC0396 LuxR family transcriptional regulator
VC0397 VC0397 single-stranded DNA-binding protein
VC0398 VC0398 regulatory protein CsrD
VC0399 VC0399 MSHA biogenesis protein MshI
VC0400 VC0400 MSHA biogenesis protein MshJ
VC0401 VC0401 MSHA biogenesis protein MshK
VC0402 VC0402 MSHA biogenesis protein MshL
VC0403 VC0403 MSHA biogenesis protein MshM
VC0404 VC0404 MSHA biogenesis protein MshN
VC0405 VC0405 MSHA biogenesis protein MshE
VC0406 VC0406 MSHA biogenesis protein MshG
VC0407 VC0407 MSHA biogenesis protein MshF
VC0408 VC0408 MSHA pilin protein MshB
VC0409 VC0409 MSHA pilin protein MshA
VC0410 VC0410 MSHA pilin protein MshC
VC0411 VC0411 MSHA pilin protein MshD
VC0412 VC0412 hypothetical protein
VC0413 VC0413 hypothetical protein
VC0414 VC0414 hypothetical protein