Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002bd10
Genome
Shewanella oneidensis - NC_004347.2
TF
HexR [UniProtKB:Q8EE97, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGGTAATTAAGTTACAA + [2001967, 2001983] 21849503 Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Fluorescence anisotropy (ECO:0005632) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 984

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... gnd
Gene Locus tag Description
gnd SO_1902 6-phosphogluconate dehydrogenase decarboxylating Gnd