Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002bd00
Genome
Shewanella oneidensis - NC_004347.2
TF
HexR [UniProtKB:Q8EE97, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTAATATTGCTACAG + [1264667, 1264683] 21849503 Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 984

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... deoA deoB deoD
Gene Locus tag Description
deoA SO_1218 thymidine phosphorylase DeoA
deoB SO_1219 phosphopentomutase DeoB
deoD SO_1221 purine nucleoside phosphorylase DeoD