Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
NagR [UniProtKB:Q8EBJ8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CATGACAGCGTTGTCATT - [3669784, 3669801] 21810205 Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 981

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... SO_3514 SO_3513 SO_3512 nagR
Gene Locus tag Description
SO_3514 SO_3514 TonB-dependent chitooligosaccharide receptor
SO_3513 SO_3513 flavin-dependent tryptophan halogenase
SO_3512 SO_3512 SapC family protein
nagR SO_3516 transcriptional repressor of N-acetylglucosamine utilization NagR