Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
NagR [UniProtKB:Q8EBJ8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AATGACAACGCTGTCATC - [3663878, 3663895] 21810205 Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 981

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... SO_3510 hexB SO_4804
Gene Locus tag Description
SO_3510 SO_3510 pseudo
hexB SO_3509 beta-N-acetylhexosaminidase HexB
SO_4804 SO_4804 pseudo