Transcription Factor Binding Site Information

Yersinia pestis - NC_005810.1
OmpR [UniProtKB:Q7CFX0, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GAAATTCTTTGTTACATGAA - [2583294, 2583313] 21345178 Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 971

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ompX rhaT11 rimI1 tam
Gene Locus tag Description
ompX YP_2321 outer membrane protein X
rhaT11 YP_2322 threonine and homoserine efflux system
rimI1 YP_2323 hypothetical protein
tam YP_2324 trans-aconitate 2-methyltransferase