Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00029b00
Genome
Peptoclostridium difficile - NC_009089.1
TF
CcpA [UniProtKB:Q18AR8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TAGATAAGGTTTTCTT + [3368187, 3368202] 22989714 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - 936

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... CD630_28790 fhuD fhuB fhuG fhuC CD630_28740
Gene Locus tag Description
CD630_28790 CD630_28790 hypothetical protein
fhuD CD630_28780 ABC transporter ferrichrome-specific extracellular solute-binding protein
fhuB CD630_28770 ABC transporter ferrichrome-specific permease
fhuG CD630_28760 ABC transporter ferrichrome-specific permease
fhuC CD630_28750 ABC transporter ferrichrome-specific ATP-binding protein
CD630_28740 CD630_28740 drug/sodium antiporter, MATE family