Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00029980
Genome
Peptoclostridium difficile - NC_009089.1
TF
CcpA [UniProtKB:Q18AR8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AAGAAAGCGTTTTGAA + [1603652, 1603667] 22989714 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - 936

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... CD630_13850 CD630_13840 CD630_13830 CD630_13860 CD630_13870
Gene Locus tag Description
CD630_13850 CD630_13850 natural resistance-associated macrophage protein
CD630_13840 CD630_13840 LamB/YcsF family protein
CD630_13830 CD630_13830 GntR family transcriptional regulator
CD630_13860 CD630_13860 allophanate hydrolase subunit 1
CD630_13870 CD630_13870 allophanate hydrolase subunit 2