Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00029870
Genome
Peptoclostridium difficile - NC_009089.1
TF
CcpA [UniProtKB:Q18AR8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AGTAAAACGGTTTCCT + [359055, 359070] 22989714 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 936

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rbsR rbsK rbsB rbsA rbsC
Gene Locus tag Description
rbsR CD630_02980 LacI family transcriptional regulator
rbsK CD630_02990 ribokinase, pfkB family
rbsB CD630_03000 ABC transporter ribose-specific extracellular solute-binding protein
rbsA CD630_03010 ABC transporter ribose-specific ATP-binding protein
rbsC CD630_03020 ABC transporter ribose-specific permease