Transcription Factor Binding Site Information

Vibrio cholerae - NC_012667.1
HapR [UniProtKB:A0A0H3Q915, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTATTGATTTTTAATCAAATAA + [6297, 6318] 19276207 Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details PSSM site search (ECO:0005659) - 924

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... VCD_000008 VCD_000009 VCD_000007 VCD_000006 araD VCD_000011 ulaD VCD_000013
Gene Locus tag Description
VCD_000008 VCD_000008 PTS system ascorbate-specific transporter subunits IICB
VCD_000009 VCD_000009 PTS system 3-keto-L-gulonate/L-ascorbate specific IIA component (PtxA)
VCD_000007 VCD_000007 DeoR-type transcriptional regulator, eco:b4191 ortholog
VCD_000006 VCD_000006 L-ascorbate 6-phosphate lactonase
araD VCD_000010 L-ribulose-5-phosphate 4-epimerase
VCD_000011 VCD_000011 predicted hydrolase
ulaD VCD_000012 3-keto-L-gulonate-6-phosphate decarboxylase
VCD_000013 VCD_000013 L-xylulose 5-phosphate 3-epimerase