Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGTAAATAAGGTGTGACAGA - [1370044, 1370064] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ycjM ycjN ycjO ycjP ycjQ ycjR ycjS ycjT ycjU ycjV ompG
Gene Locus tag Description
ycjM b1309 predicted glucosyltransferase
ycjN b1310 predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily
ycjO b1311 predicted sugar transporter subunit: membrane component of ABC superfamily
ycjP b1312 predicted sugar transporter subunit: membrane component of ABC superfamily
ycjQ b1313 predicted oxidoreductase, Zn-dependent and NAD(P)-binding
ycjR b1314 predicted enzyme
ycjS b1315 predicted oxidoreductase, NADH-binding
ycjT b1316 predicted hydrolase
ycjU b1317 beta-phosphoglucomutase
ycjV b4524 pseudo
ompG b1319 outer membrane porin G