Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AAGTTACATAAATGTAAATAA - [3526223, 3526243] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... nudE yrfF yrfG hslR hslO
Gene Locus tag Description
nudE b3397 adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP-ribose, NADH
yrfF b3398 inner membrane protein
yrfG b3399 GMP/IMP nucleotidase
hslR b3400 ribosome-associated heat shock protein Hsp15
hslO b3401 heat shock protein Hsp33