Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGTAAATTACGCGTTAACAG + [4196303, 4196323] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... thiC thiE thiF thiS thiG thiH
Gene Locus tag Description
thiC b3994 phosphomethylpyrimidine synthase
thiE b3993 thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
thiF b3992 adenylyltransferase, modifies ThiS C-terminus
thiS b4407 immediate sulfur donor in thiazole formation
thiG b3991 thiamin biosynthesis ThiGH complex subunit
thiH b3990 tyrosine lyase, involved in thiamin-thiazole moiety synthesis