Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ACGTTAATGCAATGTGAAAAA - [3401812, 3401832] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... csrD mreB mreC mreD yhdE rng yhdP acuI yrdF yrdE
Gene Locus tag Description
csrD b3252 targeting factor for csrBC sRNA degradation
mreB b3251 cell wall structural complex MreBCD, actin-like component MreB
mreC b3250 cell wall structural complex MreBCD transmembrane component MreC
mreD b3249 cell wall structural complex MreBCD transmembrane component MreD
yhdE b3248 Maf-like protein
rng b3247 ribonuclease G
yhdP b4472 conserved membrane protein, predicted transporter
acuI b3253 predicted acryloyl-CoA reductase
yrdF b4697 pseudo
yrdE b4646 pseudo