Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTTAGTGTAATGTTATGGC + [2873307, 2873327] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ygbE ftsB ispD ispF truD surE pcm nlpD rpoS
Gene Locus tag Description
ygbE b2749 DUF3561 family inner membrane protein
ftsB b2748 cell division protein
ispD b2747 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
ispF b2746 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
truD b2745 tRNA(Glu) pseudouridine(13) synthase
surE b2744 broad specificity 5'(3')-nucleotidase and polyphosphatase
pcm b2743 L-isoaspartate protein carboxylmethyltransferase type II
nlpD b2742 activator of AmiC murein hydrolase activity, lipoprotein
rpoS b2741 RNA polymerase, sigma S (sigma 38) factor