Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGTTACTAATTTGTTGCTTT + [2788838, 2788858] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... csiD lhgO gabD gabT
Gene Locus tag Description
csiD b2659 carbon starvation protein
lhgO b2660 L-2-hydroxyglutarate oxidase
gabD b2661 succinate-semialdehyde dehydrogenase I, NADP-dependent
gabT b2662 4-aminobutyrate aminotransferase, PLP-dependent