Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TAGTTAACATTTCGTTAAAAG - [1453712, 1453732] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... paaZ paaA paaB paaC paaD paaE paaF paaG paaH paaI paaJ paaK paaX paaY
Gene Locus tag Description
paaZ b1387 fused oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase
paaA b1388 ring 1,2-phenylacetyl-CoA epoxidase subunit
paaB b1389 ring 1,2-phenylacetyl-CoA epoxidase possible subunit, not required for in vitro activity
paaC b1390 ring 1,2-phenylacetyl-CoA epoxidase subunit
paaD b1391 ring 1,2-phenylacetyl-CoA epoxidase subunit
paaE b1392 ring 1,2-phenylacetyl-CoA epoxidase, NAD(P)H oxidoreductase component
paaF b1393 2,3-dehydroadipyl-CoA hydratase
paaG b1394 1,2-epoxyphenylacetyl-CoA isomerase, oxepin-CoA-forming
paaH b1395 3-hydroxyadipyl-CoA dehydrogenase, NAD+-dependent
paaI b1396 thioesterase, most active with ring-hydroxylated phenylacetyl-coenzyme A thioesters
paaJ b1397 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase
paaK b1398 phenylacetyl-CoA ligase
paaX b1399 DNA-binding transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl-CoA inducer
paaY b1400 predicted hexapeptide repeat acetyltransferase