Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTTAACGCTGCGTTACGAT - [1103856, 1103876] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... csgB csgD csgE csgF csgG csgA csgC ymdA ymdB clsC
Gene Locus tag Description
csgB b1041 curlin nucleator protein, minor subunit in curli complex
csgD b1040 DNA-binding transcriptional activator for csgBA
csgE b1039 curlin secretion specificity factor
csgF b1038 outer membrane protein required for curli nucleation by CsgB
csgG b1037 curli production assembly/transport outer membrane lipoprotein
csgA b1042 curlin subunit, amyloid curli fibers, cryptic
csgC b1043 curli assembly protein
ymdA b1044 predicted protein
ymdB b1045 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit
clsC b1046 stationary phase cardiolipin synthase 3