Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000246b0
Genome
Escherichia coli - NC_000913.3
TF
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTTAATTCGGCGTGAAGAA + [878148, 878168] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... bssR rimO yliI
Gene Locus tag Description
bssR b0836 repressor of biofilm formation by indole transport regulation
rimO b0835 ribosomal protein S12 methylthiotransferase; radical SAM superfamily
yliI b0837 soluble aldose sugar dehydrogenase