Transcription Factor Binding Site Information

Escherichia coli - NC_000913.3
ArcA [UniProtKB:P0A9Q1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTTAAATGTAAGTTAAAAC + [606204, 606224] 24146625 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 871

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ybdJ ybdF nfsB ybdG
Gene Locus tag Description
ybdJ b0580 predicted inner membrane protein
ybdF b0579 conserved protein
nfsB b0578 dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
ybdG b0577 mechanosensitive channel protein, miniconductance