Transcription Factor Binding Site Information

Aliivibrio fischeri - NC_006840.2
CRP [UniProtKB:Q5E2H1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATTATGAAAAACTTCACACTT - [1144019, 1144039] 23995643 Experimental technique details Fluorescence anisotropy (ECO:0005632) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - 843

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ainS ainR rluB
Gene Locus tag Description
ainS VF_1037 C8-HSL autoinducer synthesis protein AinS
ainR VF_1036 autoinducer regulatory protein AinR
rluB VF_1038 23S rRNA pseudouridylate synthase