Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00021fc0
Genome
Pseudomonas putida - NC_018220.1
TF
TodT [UniProtKB:I7CA98, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATAAACCATCGTTTAT + [4639298, 4639313] 18166197 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Isothermal titration calorimetry (ECO:0005647) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 782

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... T1E_4262 todX T1E_4261
Gene Locus tag Description
T1E_4262 T1E_4262 membrane protein involved in aromatic hydrocarbon degradation
todX T1E_4263 toluene transporter ToxD
T1E_4261 T1E_4261 LysR family transcriptional regulator