Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00012910
Genome
Peptoclostridium difficile - NC_013316.1
TF
LexA [UniProtKB:A0A0H3NC35, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TAGAACATAAAAATTT + [953591, 953606] 24713082 Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details Surface plasmon resonance - 645

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... CDR20291_0782 CDR20291_0781 oppB oppC oppA oppD oppF
Gene Locus tag Description
CDR20291_0782 CDR20291_0782 MarR family transcriptional regulator
CDR20291_0781 CDR20291_0781 hypothetical protein
oppB CDR20291_0783 oligopeptide ABC transporter permease
oppC CDR20291_0784 oligopeptide ABC transporter permease
oppA CDR20291_0785 oligopeptide ABC transporter substrate-binding protein
oppD CDR20291_0786 oligopeptide ABC transporter ATP-binding protein
oppF CDR20291_0787 oligopeptide ABC transporter ATP-binding protein