Transcription Factor Binding Site Information

Xanthomonas campestris - NC_003902.1
SoxR [UniProtKB:Q8P6Y4, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CCTCAACCAAGGTTGAGG - [3344464, 3344481] 22056938 Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - 630

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... soxR XCC2830 XCC2829 XCC2832
Gene Locus tag Description
soxR XCC2831 SoxR family transcriptional regulator
XCC2830 XCC2830 hypothetical protein
XCC2829 XCC2829 peptidase
XCC2832 XCC2832 MFS transporter