Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0000f180
Genome
Escherichia coli - NC_000913.2
TF
AraC [UniProtKB:P0A9E0, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CAGAGCAGGAAAATCCATA + [4447795, 4447813] 24272778 Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 622

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ytfQ ppa ytfR ytfT yjfF
Gene Locus tag Description
ytfQ b4227 galactofuranose binding proteint: periplasmic-binding component of ABC superfamily
ppa b4226 inorganic pyrophosphatase
ytfR b4485 predicted sugar transporter subunit: ATP-binding component of ABC superfamily
ytfT b4230 predicted sugar transporter subunit: membrane component of ABC superfamily
yjfF b4231 predicted sugar transporter subunit: membrane component of ABC superfamily