Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0000cfb0
Genome
Pseudomonas putida - NC_002947.3
TF
NtrC [UniProtKB:Q88CY1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CGCCCCTGCTTTGTGCG + [3246691, 3246707] 19648236 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Visual sequence inspection (nan) - 589

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ureD ureA ureB ureC ureE ureJ ureF ureG PP_2850
Gene Locus tag Description
ureD PP_2842 urease accessory protein UreD
ureA PP_2843 urease subunit gamma
ureB PP_2844 urease subunit beta
ureC PP_2845 urease subunit alpha
ureE PP_2846 urease accessory protein UreE
ureJ PP_2847 HupE/UreJ protein
ureF PP_2848 urease accessory protein UreF
ureG PP_2849 urease accessory protein UreG
PP_2850 PP_2850 hypothetical protein