Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0000cf00
Genome
Pseudomonas putida - NC_002947.3
TF
HexR [UniProtKB:Q88P32, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTTGGAATTACAA + [1151074, 1151088] 19506074 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - 582

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... gap-1 edd glk gltR-2 PP_1013
Gene Locus tag Description
gap-1 PP_1009 glyceraldehyde-3-phosphate dehydrogenase, type I
edd PP_1010 phosphogluconate dehydratase
glk PP_1011 glucokinase
gltR-2 PP_1012 winged helix family two component transcriptional regulator
PP_1013 PP_1013 integral membrane sensor signal transduction histidine kinase