Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0000cb30
Genome
Vibrio cholerae - NC_009457.1
TF
ToxR [UniProtKB:A0A0H3AK48, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTACTTTATGTTTTT + [390496, 390510] 8576041 Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 550

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... tcpN/toxT tcpF tcpE tcpT tcpS tcpD tcpR tcpC tcpQ tcpB tcpA tcpJ acfB acfC
Gene Locus tag Description
tcpN/toxT VC0395_A0363 TCP pilus virulence regulatory protein
tcpF VC0395_A0362 toxin co-regulated pilus biosynthesis protein F
tcpE VC0395_A0361 toxin co-regulated pilus biosynthesis protein E
tcpT VC0395_A0360 toxin co-regulated pilus biosynthesis protein T
tcpS VC0395_A0359 toxin co-regulated pilus biosynthesis protein S
tcpD VC0395_A0358 toxin co-regulated pilus biosynthesis protein D
tcpR VC0395_A0357 toxin co-regulated pilus biosynthesis protein R
tcpC VC0395_A0356 toxin co-regulated pilus biosynthesis outer membrane protein C
tcpQ VC0395_A0355 toxin co-regulated pilus biosynthesis protein Q
tcpB VC0395_A0354 toxin co-regulated pilus biosynthesis protein B
tcpA VC0395_A0353 toxin co-regulated pilin
tcpJ VC0395_A0364 leader peptidase TcpJ
acfB VC0395_A0365 accessory colonization factor AcfB
acfC VC0395_A0366 accessory colonization factor AcfC